[Workshop] Plant Phenotyping-Genotyping Data Management

Workshop

Title: Plant Phenotyping-Genotyping Data Management

Speaker: Anne-Françoise Adam-Blondon

Host: Inês Chaves

Abstract

Plant phenotyping research has gone through a data revolution with the automation of plant phenotyping platforms, making it critical to adopt good data management practices in order to exploit the torrent of data to its full potential. Concretely, data should be published in a Findable, Accessible, Interoperable and Reusable (FAIR) way in order to enable the integration of data from disparate sources and the discovery of new knowledge. Yet, this is one of the more challenging domains to standardize, as it is extremely heterogeneous in terms of experimental settings and types of data. The ELIXIR infrastructure, with prominent contributions from BioData.pt (the Portuguese ELIXIR node) has been tackling this challenge at the European and international level, by developing standards and services to enable the management of plant phenotype-genotype data and its publication in accordance with the FAIR principles. In this workshop, we will be presenting the outcomes of this work from the ELIXIR plant sciences community, featuring a keynote from one of its key members, Dr. Anne-Françoise Adam-Blondon (ELIXIR-France), a detailed tutorial about the design and usage of the MIAPPE (Minimum Information About Plant Phenotyping Experiments), a hands-on data annotation and publication session, and a demonstration of ELIXIR’s Plant Data Search service.

Short Bio

2017 Chevalier de l’Ordre du Mérite Agricole (Dame of the Order of Agricultural Merit)

2013 Deputy Head, Plant Biology and Breeding Division at INRA

2010 Deputy Head, Plant Breeding and Genetics Division at INRA

2007 INRA Research Director

1994 INRA Research Scientist

2009 - 2010 School of Management for Agricultural Research

1994 PhD thesis (AgroParisTech)

1988 Qualification as an Agricultural Engineer (AgroParisTech)

Workshop – Plant Phenotyping-Genotyping Data Management Biodata.pt
 

14:00 - Opening and Welcome – ITQB NOVA Direction

14:10 - Keynote talk “The ELIXIR infrastructure for plant phenotyping-genotyping data Management” (Anne-Françoise Adam-Blondon, INRA)

15:10 - The plant phenotyping data standard MIAPPE v1.1 (Daniel Faria)

15:40 - Demonstration of the Plant Data Search Service (Bruno Costa)

16:10-16:40 – Coffee-break

Hands on Workshop on Bioinformatics
(ONLY FOR REGISTERED PARTICIPANTS) (*)

16:40 - Hands-on session - Phenotypic dataset annotation

18:25 - Closing

(*) Previous registration and acceptation is required. Registration