2012

Articles indexed in ISI Web of Science

1. Adamova G., Gardas R. L., Nieuwenhuyzen M., Puga A. V., Rebelo L. P. N., Robertson A. J. and Seddon K. R. (2012) Alkyltributylphosphonium chloride ionic liquids: synthesis, physicochemical properties and crystal structure, Dalton Transactions 41(27): 8316-8332. http://dx.doi.org/10.1039/c1dt10466g
2. de Almeida A. M. and Bendixen E. (2012) Pig proteomics: a review of a species in the crossroad between biomedical and food sciences, Journal of Proteomics 75(14): 4296-4314. http://dx.doi.org/10.1016/j.jprot.2012.04.010
3. Almeida A. M., Parreira J. R., Santos R., Duque A. S., Francisco R., Tome D. F., Ricardo C. P., Coelho A. V. and Fevereiro P. (2012) A proteomics study of the induction of somatic embryogenesis in Medicago truncatula using 2DE and MALDI-TOF/TOF, Physiologia Plantarum 146(2): 236-249. http://dx.doi.org/10.1111/j.1399-3054.2012.01633.x
4. Almeida A. S., Queiroga C. S. F., Sousa M. F. Q., Alves P. M. and Vieira H. L. A. (2012) Carbon monoxide modulates apoptosis by reinforcing oxidative metabolism in astrocytes ROLE OF Bcl-2, Journal of Biological Chemistry 287(14): 10761-10770. http://dx.doi.org/10.1074/jbc.M111.306738
5. Almeida F., Borges V., Ferreira R., Borrego M. J., Gomes J. P. and Mota L. J. (2012) Polymorphisms in inc proteins and differential expression of inc genes among Chlamydia trachomatis strains correlate with invasiveness and tropism of lymphogranuloma venereum isolates, Journal of Bacteriology 194(23): 6574-6585. http://dx.doi.org/10.1128/jb.01428-12
6. Alves E., Henriques B. J., Rodrigues J. V., Prudencio P., Rocha H., Vilarinho L., Martinho R. G. and Gomes C. M. (2012) Mutations at the flavin binding site of ETF:QO yield a MADD-like severe phenotype in Drosophila, Biochimica Et Biophysica Acta-Molecular Basis of Disease 1822(8): 1284-1292. http://dx.doi.org/10.1016/j.bbadis.2012.05.003
7. Andrade J. M., Pobre V., Matos A. M. and Arraiano C. M. (2012) The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq, Rna-a Publication of the Rna Society 18(4): 844-855. http://dx.doi.org/10.1261/rna.029413.111
8. Arede P., Milheirico C., de Lencastre H. and Oliveira D. C. (2012) The anti-repressor MecR2 promotes the proteolysis of the mecA repressor and enables optimal expression of beta-lactam resistance in MRSA, Plos Pathogens 8(7): e1002816. http://dx.doi.org/10.1371/journal.ppat.1002816
9. Azoia N. G., Fernandes M. M., Micaelo N. M., Soares C. M. and Cavaco-Paulo A. (2012) Molecular modeling of hair keratin/peptide complex: using MM-PBSA calculations to describe experimental binding results, Proteins-Structure Function and Bioinformatics 80(5): 1409-1417. http://dx.doi.org/10.1002/prot.24037
10. Baltazar C. S. A., Teixeira V. H. and Soares C. M. (2012) Structural features of NiFeSe and NiFe hydrogenases determining their different properties: a computational approach, Journal of Biological Inorganic Chemistry 17(4): 543-555. http://dx.doi.org/10.1007/s00775-012-0875-2
11. Bandeira V., Peixoto C., Rodrigues A. F., Cruz P. E., Alves P. M., Coroadinha A. S. and Carrondo M. J. T. (2012) Downstream processing of lentiviral vectors: releasing bottlenecks, Human Gene Therapy Methods 23(4): 255-263. http://dx.doi.org/10.1089/hgtb.2012.059
12. Baptista J. M., Justino M. C., Melo A. M. P., Teixeira M. and Saraiva L. M. (2012) Oxidative stress modulates the nitric oxide defense promoted by Escherichia coli flavorubredoxin, Journal of Bacteriology 194(14): 3611-3617. http://dx.doi.org/10.1128/jb.00140-12
13. Barreto M. C., Houbraken J., Samson R. A., Brito D., Gadanho M. and San Romao M. V. (2012) Unveiling the fungal mycobiota present throughout the cork stopper manufacturing process, FEMS Microbiology Ecology 82(1): 202-214. http://dx.doi.org/10.1111/j.1574-6941.2012.01419.x
14. Barros M. T., Dey S. S., Maycock C. D. and Rodrigues P. (2012) Metal-free direct amination/aromatization of 2-cyclohexenones to iodo-N-arylanilines and N-arylanilines promoted by iodine, Chemical Communications 48(88): 10901-10903. http://dx.doi.org/10.1039/c2cc35801h
15. Barros M. T., Dey S. S., Maycock C. D. and Rodrigues P. (2012) Preparation of N-arylamines from 2-oxo-7-azobicyclo 4.1.0 heptanes, Tetrahedron 68(31): 6263-6268. http://dx.doi.org/10.1016/j.tet.2012.05.054
16. Barros P. M., Goncalves N., Saibo N. J. M. and Oliveira M. M. (2012) Cold acclimation and floral development in almond bud break: insights into the regulatory pathways, Journal of Experimental Botany 63(12): 4585-4596. http://dx.doi.org/10.1093/jxb/ers144
17. Barros P. M., Goncalves N., Saibo N. J. M. and Oliveira M. M. (2012) Functional characterization of two almond C-repeat-binding factors involved in cold response, Tree Physiology 32(9): 1113-1128. http://dx.doi.org/10.1093/treephys/tps067
18. Batista A. P., Marreiros B. C., Louro R. O. and Pereira M. M. (2012) Study of ion translocation by respiratory complex I. A new insight using Na-23 NMR spectroscopy, Biochimica Et Biophysica Acta-Bioenergetics 1817(10): 1810-1816. http://dx.doi.org/10.1016/j.bbabio.2012.03.009
19. Batista A. P., Marreiros B. C. and Pereira M. M. (2012) The role of proton and sodium ions in energy transduction by respiratory complex I, Iubmb Life 64(6): 492-498. http://dx.doi.org/10.1002/iub.1050
20. Batista-Nascimento L., Pimentel C., Menezes R. A. and Rodrigues-Pousada C. (2012) Iron and neurodegeneration: from cellular homeostasis to disease, Oxidative Medicine and Cellular Longevity 2012: Article ID 128647. http://dx.doi.org/10.1155/2012/128647
21. Bernardes C. E. S., da Piedade M. E. M. and Lopes J. N. C. (2012) Polymorphism in 4 '-Hydroxyacetophenone: a molecular dynamics simulation study, Journal of Physical Chemistry B 116(17): 5179-5184. http://dx.doi.org/10.1021/jp300341f
22. Bernier N., Esteves C. V. and Delgado R. (2012) Heteroditopic receptor based on crown ether and cyclen units for the recognition of zwitterionic amino acids, Tetrahedron 68(24): 4860-4868. http://dx.doi.org/10.1016/j.tet.2012.03.110
23. Bhattacharjee A., Varanda C., Freire M. G., Matted S., Santos L. M. N. B. F., Marrucho I. M. and Coutinho J. A. P. (2012) Density and viscosity data for binary mixtures of 1-Alkyl-3-methylimidazolium alkylsulfates plus water, Journal of Chemical and Engineering Data 57(12): 3473-3482. http://dx.doi.org/10.1021/je300622r
24. Bonifacio V. D. B., Correia V. G., Pinho M. G., Lima J. C. and Aguiar-Ricardo A. (2012) Blue emission of carbamic acid oligooxazoline biotags, Materials Letters 81: 205-208. http://dx.doi.org/10.1016/j.matlet.2012.04.134
25. Botelho H. M., Leal S. S., Cardoso I., Yanamandra K., Morozova-Roche L. A., Fritz G. and Gomes C. M. (2012) S100A6 amyloid fibril formation is calcium-modulated and enhances superoxide dismutase-1 (SOD1) aggregation, Journal of Biological Chemistry 287(50): 42233-42242. http://dx.doi.org/10.1074/jbc.M112.396416
26. Bouchami O., Ben Hassen A., de Lencastre H. and Miragaia M. (2012) High prevalence of mec complex C and ccrC is independent of SCCmec type V in Staphylococcus haemolyticus, European Journal of Clinical Microbiology & Infectious Diseases 31(4): 605-614. http://dx.doi.org/10.1007/s10096-011-1354-3
27. Bradic M., Beerli P., Garcia-de Leon F. J., Esquivel-Bobadilla S. and Borowsky R. L. (2012) Gene flow and population structure in the Mexican blind cavefish complex (Astyanax mexicanus), Bmc Evolutionary Biology 12: ART9. http://dx.doi.org/10.1186/1471-2148-12-9
28. Brissos V., Chen Z. J. and Martins L. O. (2012) The kinetic role of carboxylate residues in the proximity of the trinuclear centre in the O-2 reactivity of CotA-laccase, Dalton Transactions 41(20): 6247-6255. http://dx.doi.org/10.1039/c2dt12067d
29. Brito C., Simao D., Costa I., Malpique R., Pereira C. I., Fernandes P., Serra M., Schwarz S. C., Schwarz J., Kremer E. J. and Alves P. M. (2012) Generation and genetic modification of 3D cultures of human dopaminergic neurons derived from neural progenitor cells, Methods 56(3): 452-460. http://dx.doi.org/10.1016/j.ymeth.2012.03.005
30. Bruno S. M., Gamelas C. A., Gomes A. C., Valente A. A., Pillinger M., Romao C. C. and Goncalves I. S. (2012) Isomerisation of alpha-pinene oxide in the presence of indenyl allyl dicarbonyl molybdenum(II) and tungsten(II) complexes, Catalysis Communications 23: 58-61. http://dx.doi.org/10.1016/j.catcom.2012.03.006
31. Cal P. M. S. D., Vicente J. B., Pires E., Coelho A. V., Veiros L. F., Cordeiro C. and Gois P. M. P. (2012) Iminoboronates: a new strategy for reversible protein modification, Journal of the American Chemical Society 134(24): 10299-10305. http://dx.doi.org/10.1021/ja303436y
32. Callaghan A. V., Morris B. E. L., Pereira I. A. C., McInerney M. J., Austin R. N., Groves J. T., Kukor J. J., Suflita J. M., Young L. Y., Zylstra G. J. and Wawrik B. (2012) The genome sequence of Desulfatibacillum alkenivorans AK-01: a blueprint for anaerobic alkane oxidation, Environmental Microbiology 14(1): 101-113. http://dx.doi.org/10.1111/j.1462-2920.2011.02516.x
33. Campos E., Asandei A., McVey C. E., Dias J. C., Oliveira A. S. F., Soares C. M., Luchian T. and Astier Y. (2012) The role of Lys147 in the interaction between MPSA-gold nanoparticles and the alpha-hemolysin nanopore, Langmuir 28(44): 15643-15650. http://dx.doi.org/10.1021/la302613g
34. Cardoso J. M. S. and Royo B. (2012) Unprecedented synthesis of iron-NHC complexes by C-H activation of imidazolium salts. Mild catalysts for reduction of sulfoxides, Chemical Communications 48(41): 4944-4946. http://dx.doi.org/10.1039/c2cc31564e
35. Cardoso S., Lau W., Dias J. E., Fevereiro P. and Maniatis N. (2012) A candidate-gene association study for berry colour and anthocyanin content in Vitis vinifera L, PLoS ONE 7(9): e46021. http://dx.doi.org/10.1371/journal.pone.0046021
36. Carinhas N., Oliveira R., Alves P. M., Carrondo M. J. T. and Teixeira A. P. (2012) Systems biotechnology of animal cells: the road to prediction, Trends in Biotechnology 30(7): 377-385. http://dx.doi.org/10.1016/j.tibtech.2012.03.004
37. Carrondo M. J. T., Alves P. M., Carinhas N., Glassey J., Hesse F., Merten O. W., Micheletti M., Noll T., Oliveira R., Reichl U., Staby A., Teixeira A. P., Weichert H. and Mandenius C. F. (2012) How can measurement, monitoring, modeling and control advance cell culture in industrial biotechnology?, Biotechnology Journal 7(12): 1522-1529. http://dx.doi.org/10.1016/10.1002/biot.201200226
38. Carvalho S. D., Saraiva R., Maia T. M., Abreu I. A. and Duque P. (2012) XBAT35, a novel arabidopsis RING E3 ligase exhibiting dual targeting of its splice isoforms, is involved in ethyllene-mediated regulation of apical hook curvature, Molecular Plant 5(6): 1295-1309. http://dx.doi.org/10.1093/mp/sss048
39. Carvalho-Santos Z., Machado P., Alvarez-Martins I., Gouveia S. M., Jana S. C., Duarte P., Amado T., Branco P., Freitas M. C., Silva S. T. N., Antony C., Bandeiras T. M. and Bettencourt-Dias M. (2012) BLD10/CEP135 is a microtubule-associated protein that controls the formation of the flagellum central microtubule pair, Developmental Cell 23(2): 412-424. http://dx.doi.org/10.1016/j.devcel.2012.06.001
40. Cassan-Wang H., Soler M., Yu H., Camargo E. L. O., Carocha V., Ladouce N., Savelli B., Paiva J. A. P., Leple J. C. and Grima-Pettenati J. (2012) Reference genes for high-throughput quantitative reverse transcription-PCR analysis of gene expression in organs and tissues of Eucalyptus grown in various environmental conditions, Plant and Cell Physiology 53(12): 2101-2116. http://dx.doi.org/10.1093/pcp/pcs152
41. Chagas R., Monteiro S. and Ferreira R. B. (2012) Assessment of potential effects of common fining agents used for white wine protein stabilization, American Journal of Enology and Viticulture 63(4): 574-578. http://dx.doi.org/10.5344/ajev.2012.12016
42. Chahboun G., Brito J. A., Royo B., El Amrani M. A., Gomez-Bengoa E., Mosquera M. E. G., Cuenca T. and Royo E. (2012) Olefin epoxidation catalyzed by cis-Dioxdomolybdenum(VI) complexes containing chiral alkoxo-imino ligands derived from (+)-alpha-pinene, European Journal of Inorganic Chemistry 2012(17): 2940-2949. http://dx.doi.org/10.1002/ejic.201200144
43. Chakraborty S., Iranzo O., Zuiderweg E. R. P. and Pecoraro V. L. (2012) Experimental and theoretical evaluation of multisite Cadmium(II) exchange in designed three-stranded coiled-coil peptides, Journal of the American Chemical Society 134(14): 6191-6203. http://dx.doi.org/10.1021/ja210510g
44. Cherian S., Weyens N., Lindberg S. and Vangronsveld J. (2012) Phytoremediation of trace element-contaminated environments and the potential of endophytic bacteria for improving this process, Critical Reviews in Environmental Science and Technology 42(21): 2215-2260. http://dx.doi.org/10.1080/10643389.2011.574106
45. Conceicao T., de Sousa M. A., Miragaia M., Paulino E., Barroso R., Brito M. J., Sardinha T., Sancho L., Carreiro H., de Sousa G., Machado M. D. and de Lencastre H. (2012) Staphylococcus aureus reservoirs and transmission routes in a Portuguese neonatal intensive care unit: a 30-month surveillance study, Microbial Drug Resistance 18(2): 116-124. http://dx.doi.org/10.1089/mdr.2011.0182
46. Correia A. C., Minunno F., Caldeira M. C., Banza J., Mateus J., Carneiro M., Wingate L., Shvaleva A., Ramos A., Jongen M., Bugalho M. N., Nogueira C., Lecomte X. and Pereira J. S. (2012) Soil water availability strongly modulates soil CO2 efflux in different Mediterranean ecosystems: Model calibration using the Bayesian approach, Agriculture Ecosystems & Environment 161: 88-100. http://dx.doi.org/10.1016/j.agee.2012.07.025
47. Costa A. J. L., Soromenho M. R. C., Shimizu K., Marrucho I. M., Esperanca J. M. S. S., Lopes J. N. C. and Rebelo L. P. N. (2012) Density, thermal expansion and viscosity of cholinium-derived ionic liquids, Chemphyschem 13(7): 1902-1909. http://dx.doi.org/10.1002/cphc.201100852
48. Costa A. J. L., Soromenho M. R. C., Shimizu K., Marrucho I. M., Esperanca J. M. S. S., Lopes J. N. C. and Rebelo L. P. N. (2012) Liquid-liquid equilibrium of cholinium-derived bistriflimide ionic liquids with water and octanol, Journal of Physical Chemistry B 116(30): 9186-9195. http://dx.doi.org/10.1021/jp3053168
49. Costa J. M., Ortuno M. F., Lopes C. M. and Chaves M. M. (2012) Grapevine varieties exhibiting differences in stomatal response to water deficit, Functional Plant Biology 39(3): 179-189. http://dx.doi.org/10.1071/fp11156
50. Costa P. M., Milhinhos A., Simoes M., Marum L., Oliveira A. M., Costa M. H. and Miguel C. (2012) Determining DNA strand breakage from embryogenic cell cultures of a conifer species using the single-cell gel electrophoresis assay, Tree Genetics & Genomes 8(2): 425-430. http://dx.doi.org/10.1007/s11295-011-0434-y
51. da Costa S. B., Duarte C., Bourbon A. I., Pinheiro A. C., Serra A. T., Martins M. M., Januario M. I. N., Vicente A. A., Delgadillo I. and da Costa M. L. B. (2012) Effect of the matrix system in the delivery and in vitro bioactivity of microencapsulated Oregano essential oil, Journal of Food Engineering 110(2): 190-199. http://dx.doi.org/10.1016/j.jfoodeng.2011.05.043
52. Courtois B., Frouin J., Greco R., Bruschi G., Droc G., Hamelin C., Ruiz M., Clement G., Evrard J. C., van Coppenole S., Katsantonis D., Oliveira M., Negrao S., Matos C., Cavigiolo S., Lupotto E., Piffanelli P. and Ahmadi N. (2012) Genetic diversity and population structure in a european collection of rice, Crop Science 52(4): 1663-1675. http://dx.doi.org/10.2135/cropsci2011.11.0588
53. Dantas J. M., Morgado L., Londer Y. Y., Fernandes A. P., Louro R. O., Pokkuluri P. R., Schiffer M. and Salgueiro C. A. (2012) Pivotal role of the strictly conserved aromatic residue F15 in the cytochrome c(7) family, Journal of Biological Inorganic Chemistry 17(1): 11-24. http://dx.doi.org/10.1007/s00775-011-0821-8
54. Deive F. J., Rodriguez A., Rebelo L. P. N. and Marrucho I. M. (2012) Extraction of Candida antarctica lipase A from aqueous solutions using imidazolium-based ionic liquids, Separation and Purification Technology 97: 205-210. http://dx.doi.org/10.1016/j.seppur.2011.12.013
55. Denkmann K., Grein F., Zigann R., Siemen A., Bergmann J., van Helmont S., Nicolai A., Pereira I. A. C. and Dahl C. (2012) Thiosulfate dehydrogenase: a widespread unusual acidophilic c-type cytochrome, Environmental Microbiology 14(10): 2673-2688. http://dx.doi.org/10.1111/j.1462-2920.2012.02820.x
56. Dias A. M. A., Marceneiro S., Braga M. E. M., Coelho J. F. J., Ferreira A. G. M., Simoes P. N., Veiga H. I. M., Tome L. C., Marrucho I. M., Esperanca J. M. S. S., Matias A. A., Duarte C. M. M., Rebelo L. P. N. and de Sousa H. C. (2012) Phosphonium-based ionic liquids as modifiers for biomedical grade poly(vinyl chloride), Acta Biomaterialia 8(3): 1366-1379. http://dx.doi.org/10.1016/j.actbio.2011.10.034
57. Fagone P., Mangano K., Coco M., Perciavalle V., Garotta G., Romao C. C. and Nicoletti F. (2012) Therapeutic potential of carbon monoxide in multiple sclerosis, Clinical and Experimental Immunology 167(2): 179-187. http://dx.doi.org/10.1111/j.1365-2249.2011.04491.x
58. Fernandes A. T., Lopes C., Martins L. O. and Melo E. P. (2012) Unfolding pathway of CotA-laccase and the role of copper on the prevention of refolding through aggregation of the unfolded state, Biochemical and Biophysical Research Communications 422(3): 442-446. http://dx.doi.org/10.1016/j.bbrc.2012.05.011
59. Fernandes F., Vidigal J., Dias M. M., Prather K. L. J., Coroadinha A. S., Teixeira A. P. and Alves P. M. (2012) Flipase-mediated cassette exchange in Sf9 insect cells for stable gene expression, Biotechnology and Bioengineering 109(11): 2836-2844. http://dx.doi.org/10.1002/bit.24542
60. Fernandes H. L., Stevenson I. H. and Kording K. P. (2012) Generalization of stochastic visuomotor rotations, PLoS ONE 7(8): e43016. http://dx.doi.org/10.1371/journal.pone.0043016
61. Fernandes L., Centeno M., Belas A., Nunes T., Alves P. L., Couto N. and Pomba C. (2012) Immediate after birth transmission of epidemic Salmonella enterica Typhimurium monophasic strains in pigs is a likely event, Journal of Antimicrobial Chemotherapy 67(12): 3012-3014. http://dx.doi.org/10.1093/jac/dks334
62. Fernandes S., Proenca D., Cantante C., Silva F. A., Leandro C., Lourenco S., Milheirico C., de Lencastre H., Cavaco-Silva P., Pimentel M. and Sao-Jose C. (2012) Novel chimerical endolysins with broad antimicrobial activity against methicillin-resistant Staphylococcus aureus, Microbial Drug Resistance 18(3): 333-343. http://dx.doi.org/10.1089/mdr.2012.0025
63. Ferraz R., Branco L. C., Marrucho I. M., Araujo J. M. M., Rebelo L. P. N., da Ponte M. N., Prudencio C., Noronha J. P. and Petrovski Z. (2012) Development of novel ionic liquids based on ampicillin, Medchemcomm 3(4): 494-497. http://dx.doi.org/10.1039/c2md00269h
64. Ferreira R., Garcia H., Sousa A. F., Petkovic M., Lamosa P., Freire C. S. R., Silvestre A. J. D., Rebelo L. P. N. and Pereira C. S. (2012) Suberin isolation from cork using ionic liquids: characterisation of ensuing products, New Journal of Chemistry 36(10): 2014-2024. http://dx.doi.org/10.1039/c2nj40433h
65. Ferreira R. B., Freitas R. F. L. and Monteiro S. (2012) Targeting carbohydrates: a novel paradigm for fungal control, European Journal of Plant Pathology 133(1): 117-140. http://dx.doi.org/10.1007/s10658-011-9867-2
66. Ferreira R. T., Silva A. R. C., Pimentel C., Batista-Nascimento L., Rodrigues-Pousada C. and Menezes R. A. (2012) Arsenic stress elicits cytosolic Ca2+ bursts and Crz1 activation in Saccharomyces cerevisiae, Microbiology-Sgm 158: 2293-2302. http://dx.doi.org/10.1099/mic.0.059170-0
67. Figueiredo D. D., Barros P. M., Cordeiro A. M., Serra T. S., Lourenco T., Chander S., Oliveira M. M. and Saibo N. J. M. (2012) Seven zinc-finger transcription factors are novel regulators of the stress responsive gene OsDREB1B, Journal of Experimental Botany 63(10): 3643-3656. http://dx.doi.org/10.1093/jxb/ers035
68. Figueiredo M. C. O., Lobo S. A. L., Carita J. N., Nobre L. S. and Saraiva L. M. (2012) Bacterioferritin protects the anaerobe Desulfovibrio vulgaris Hildenborough against oxygen, Anaerobe 18(4): 454-458. http://dx.doi.org/10.1016/j.anaerobe.2012.06.001
69. Figueiredo T. A., Sobral R. G., Ludovice A. M., de Almeida J. M. F., Bui N. K., Vollmer W., de Lencastre H. and Tomasz A. (2012) Identification of genetic determinants and enzymes involved with the amidation of glutamic acid residues in the Peptidoglycan of Staphylococcus aureus, Plos Pathogens 8(1): e1002508. http://dx.doi.org/10.1371/journal.ppat.1002508
70. Fonseca B. M., Paquete C. M., Salgueiro C. A. and Louro R. O. (2012) The role of intramolecular interactions in the functional control of multiheme cytochromes c, Febs Letters 586(5): 504-509. http://dx.doi.org/10.1016/j.febslet.2011.08.019
71. Fonseca C., Planchon S., Renaut J., Oliveira M. M. and Batista R. (2012) Characterization of maize allergens-MON810 vs. its non-transgenic counterpart, Journal of Proteomics 75(7): 2027-2037. http://dx.doi.org/10.1016/j.jprot.2012.01.005
72. de Francesco M., Jacobs J. Z., Nunes F., Serrano M., McKenney P. T., Chua M. H., Henriques A. O. and Eichenberger P. (2012) Physical interaction between coat morphogenetic proteins SpoVID and CotE is necessary for spore encasement in Bacillus subtilis, Journal of Bacteriology 194(18): 4941-4950. http://dx.doi.org/10.1128/jb.00914-12
73. Franco C. F., Soares R., Pires E., Santos R. and Coelho A. V. (2012) Radial nerve cord protein phosphorylation dynamics during starfish arm tip wound healing events, Electrophoresis 33(24): 3764-3778. http://dx.doi.org/10.1002/elps.201200274
74. Freire M. G., Claudio A. F. M., Araujo J. M. M., Coutinho J. A. P., Marrucho I. M., Lopes J. N. C. and Rebelo L. P. N. (2012) Aqueous biphasic systems: a boost brought about by using ionic liquids, Chemical Society Reviews 41(14): 4966-4995. http://dx.doi.org/10.1039/c2cs35151j
75. Freire M. G., Neves C. M. S. S., Lopes J. N. C., Marrucho I. M., Coutinho J. A. P. and Rebelo L. P. N. (2012) Impact of self-aggregation on the formation of ionic-liquid-based aqueous biphasic systems, Journal of Physical Chemistry B 116(26): 7660-7668. http://dx.doi.org/10.1021/jp211132z
76. Freire M. G., Pereira J. F. B., Francisco M., Rodriguez H., Rebelo L. P. N., Rogers R. D. and Coutinho J. A. P. (2012) Insight into the interactions that control the phase behaviour of new aqueous biphasic systems composed of polyethylene glycol polymers and ionic liquids, Chemistry-a European Journal 18(6): 1831-1839. http://dx.doi.org/10.1002/chem.201101780
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238. Vapa I., Torres V. M., Djordjevic A., Vasovic V., Srdjenovic B., Simic V. D. and Popovic J. K. (2012) Effect of fullerenol C-60(OH)(24) on lipid peroxidation of kidneys, testes and lungs in rats treated with doxorubicine, European Journal of Drug Metabolism and Pharmacokinetics 37(4): 301-307. http://dx.doi.org/10.1007/s13318-012-0092-y
239. Vaz M., Cochard H., Gazarini L., Graca J., Chaves M. M. and Pereira J. S. (2012) Cork oak (Quercus suber L.) seedlings acclimate to elevated CO2 and water stress: photosynthesis, growth, wood anatomy and hydraulic conductivity, Trees-Structure and Function 26(4): 1145-1157. http://dx.doi.org/10.1007/s00468-012-0691-x
240. Veith A., Botelho H. M., Kindinger F., Gomes C. M. and Kletzin A. (2012) The sulfur oxygenase reductase from the mesophilic bacterium Halothiobacillus neapolitanus is a highly active thermozyme, Journal of Bacteriology 194(3): 677-685. http://dx.doi.org/10.1128/jb.06531-11
241. Ventura M., Mosquera M. E. G., Cuenca T., Royo B. and Jimenez G. (2012) Cyclopentadienyl-silsesquioxane titanium complexes: highly active catalysts for epoxidation of alkenes with aqueous hydrogen peroxide, Inorganic Chemistry 51(11): 6345-6349. http://dx.doi.org/10.1021/ic300583g
242. Vicente A. I., Caio J. M., Sardinha J., Moiteiro C., Delgado R. and Felix V. (2012) Evaluation of the binding ability of tetraaza 2 arene 2 triazine receptors anchoring L-alanine units for aromatic carboxylate anions, Tetrahedron 68(2): 670-680. http://dx.doi.org/10.1016/j.tet.2011.10.090
243. Vicente J. B., Tran V., Pinto L., Teixeira M. and Singh U. (2012) A detoxifying oxygen reductase in the anaerobic protozoan entamoeba histolytica, Eukaryotic Cell 11(9): 1112-1118. http://dx.doi.org/10.1128/ec.00149-12
244. Victor B. L., Baptista A. M. and Soares C. M. (2012) Structural determinants for the membrane insertion of the transmembrane peptide of hemagglutinin from influenza virus, Journal of Chemical Information and Modeling 52(11): 3001-3012. http://dx.doi.org/10.1021/ci3003396
245. Vilares I., Howard J. D., Fernandes H. L., Gottfried J. A. and Kording K. P. (2012) Differential representations of prior and likelihood uncertainty in the human brain, Current Biology 22(18): 1641-1648. http://dx.doi.org/10.1016/j.cub.2012.07.010
246. Vila-Vicosa D., Campos S. R. R., Baptista A. M. and Machuqueiro M. (2012) Reversibility of prion misfolding: insights from constant-pH molecular dynamics simulations, Journal of Physical Chemistry B 116(30): 8812-8821. http://dx.doi.org/10.1021/jp3034837
247. Wang Y., Loers G., Pan H. C., Gouveia R., Zhao W. J., Shen Y. Q., Kleene R., Costa J. and Schachner M. (2012) Antibody fragments directed against different portions of the human neural cell adhesion molecule L1 act as inhibitors or activators of L1 function, PLoS ONE 7(12): ARTe52404. http://dx.doi.org/10.1371/journal.pone.0052404
248. Wey D., Bohn A. and Menna-Barreto L. (2012) Daily rhythms of native Brazilians in summer and winter, Physiology & Behavior 105(3): 613-620. http://dx.doi.org/10.1016/j.physbeh.2011.10.006
249. Yata P. K., Shilpa M., Nagababu P., Reddy M. R., Kotha L. R., Gabra N. M. and Satyanarayana S. (2012) Study of DNA light switch Ru(II) complexes: synthesis, characterization, photocleavage and antimicrobial activity, Journal of Fluorescence 22(3): 835-847. http://dx.doi.org/10.1007/s10895-011-1018-9
250. Zarrouk O., Francisco R., Pinto-Marijuan M., Brossa R., Santos R. R., Pinheiro C., Costa J. M., Lopes C. and Chaves M. M. (2012) Impact of irrigation regime on berry development and flavonoids composition in Aragonez (Syn. Tempranillo) grapevine, Agricultural Water Management 114: 18-29. http://dx.doi.org/10.1016/j.agwat.2012.06.018
251. Zidaric V., Pardon B., dos Vultos T., Deprez P., Brouwer M. S. M., Roberts A. P., Henriques A. O. and Rupnik M. (2012) Different antibiotic resistance and sporulation properties within multiclonal clostridium difficile PCR ribotypes 078, 126, and 033 in a single calf farm, Applied and Environmental Microbiology 78(24): 8515-8522. http://dx.doi.org/10.1128/aem.02185-12

Articles not indexed in ISI

1. Cmoch, P. Groves, M. Palczewska and S Pikuła (2012) S100A proteins in propagation of a calcium signal in norm and pathology, Postepy Biochemii, 58(4): 429-436.
2. Ferreira, R.B., Monteiro, S. (2012) Tanino polimerase – Apenas mais um exemplo da necessidade de entendimento entre investigadores e empresários para a resolução de problemas da nossa sociedade,  Revista da Associação Portuguesa de Horticultura,pp 32-35, Enovitis
3. Matos R. G., Barria C., Pobre V., Andrade J. M. and Arraiano C. M. (2012) Exoribonucleases as modulators of virulence in pathogenic bacteria, Frontiers in Cellular and Infection Microbiology 2: 65. http://dx.doi.org/10.3389/fcimb.2012.00065
4. Monteiro F., Carinhas N., Carrondo M. J. T., Bernal V. and Alves P. M. (2012) Towards system-level understanding of baculovirus host cell interactions: from molecular fundamental studies to large-scale proteomics approaches, Frontiers in Microbiology 3: ART391. http://dx.doi.org/10.3389/fmicb.2012.00391
5. Pinto D., Ruivo M., Vandamme P. and Lopes M. F. S. (2012)Hospital-adapted clonal complex 17 Enterococcus Faecium found among sand Enterococcal isolates, Journal of Environmental Protection 3(1): 74-82. http://dx.doi.org/10.4236/jep.2012.31010
6. Queiroga C. S. F., Almeida A. S. and Vieira H. L. A. (2012)Carbon monoxide targeting mitochondria, Biochemistry Research International 2012: ART749845. http://dx.doi.org/10.1155/2012/749845
7. Ramos A. R., Keller K. L., Wall J. D. and Pereira I. A. C.(2012) The membrane QmoABC complex interacts directly with the dissimilatory adenosine 5´-phosphosulfate reductase in sulfate reducing bacteria, Frontiers in Microbiology 3: ART137. http://dx.doi.org/10.3389/fmicb.2012.00137
8. Veiga H. and Pinho M. G. (2012) Bacterial cell division: what it takes to divide a prokaryotic cell, Canal BQ9: 18-26.

Book Chapters

1. Bandeira, V., Peixoto, C., Coroadinha, A.S., Cruz, P.E., Carrondo, M.J.T., Merten, O.-W., Alves, PA. (2012)  Facing the challenges of downstream processing of lentiviral vectors In The CliniBook: Clinical gene transfer ( Odile Cohen-HaguenauerEd) EDK, Paris
2. Botelho, H, M. Fritz, G., and Gomes, C. M. (2012) Analysis of S100 Oligomers and Amyloids. in Amyloid Proteins: Methods and Protocols (Sigurdsson, E. M., Calero, M., and Gasset, M. Eds.) pp  373-386   ,Springer Science+Business Media, USA; New York, http://dx.doi.org/10.1007/978-1-61779-551-0_25
3. Brito D., Serrano C., Peres C., Peres F., Oleastro M. and Monteiro L. (2012) Lactobacilli from fermented portuguese table-olives are able to inhibit the human pathogen Helicobacter pylori, In Acta Horticulturae (E. M. Sampaio and A. C. Pinheiro, Eds.), pp 463-468, International Society for Horticultural Science, Évora
4. Chaves MM, Zarrouk O. (2012) Crop Responses to Available Soil Water in Encyclopedia of Sustainability Science and Technology, (Robert A. Meyers  Ed),Springer Science http://dx.doi.org/10.1007/978-1-4419-0851-3
5. Chaves, MM, Flexas J, Gulías J, Loreto F and Medrano H. (2012) Photosynthesis under water deficits, flooding and salinity In Ecophysiology of photosynthesis in terrestrial higher plants, (J Flexas, F Loreto & H Medrano Eds.), pp 299-311, Cambridge University Press. Cambridge. UK  http://dx.doi.org/10.1017/CBO9781139051477.024
6. Coroadinha, A.S., Wirth, D., Rodrigues, A.F., Gama-Norton, L., Duros, C., Cohen-Haguenauer, O., Alves, P.A., Cruz, P.E., Carrondo, M.J.T., Hauser, H. (2012)  Modular retroviral producer cell lines in The CliniBook: Clinical gene transfer, (Odile Cohen-Haguenauer Eds)– EDK, Paris France
7. Cunha C. and Coelho A. V. (2012) Comparative proteome analysis of a human liver cell line stably transfected with Hepatitis D virus full-length cDNA, In Liver proteomics: methods and protocols (D. Josic  and D. C. Hixxon, Eds.), Humana Press
8. Ghabbour N., Lamzira A. Z., Thonart P., Peres C. M., Markaoui M. and Asehraou A. (2012) Oleuropein biodegradation by lactic acid bacteria isolated from table olives, In Acta Horticulturae (E. M. Sampaio and A. C. Pinheiro, Eds.), pp 533-536, International Society for Horticultural Science, Évora
9. Henriques. B, J.Rodrigues, J. V., and Gomes, C. M. (2012) Riboflavin and beta-oxidation Flavoenzymes  In B Vitamins and Folate: Chemistry, Analysis, Function and Effects, (Victor R Preedy Ed) pp 611-632, The Royal Society of Chemistry http://dx.doi.org/10.1039/9781849734714-00611
10. L.L. Pimentel, M.E. Pintado, F.X. Malcata, R. Tenreiro, T. Semedo-Lemsaddek and M.T. Barreto Crespo. (2012) Introduction: a journey to the world of Enterococcu In Enterococcus and safety, (T. Semedo-Lemsaddek, M.T. Barreto-Crespo and R. Tenreiro Eds.), pp 1-4, Series Advances in Food Safety and Food Microbiology, Nova Science Publishers, NY, USA
11. Lobo S. A. L., Warren M. J. and Saraiva L. M. (2012) Sulfate-reducing bacteria reveal a new branch of tetrapyrrole metabolism, In Advances in Bacterial Respiratory Physiology, pp 267-95, Academic Press (Advances in Microbial Physiology 61) http://dx.doi.org/10.1016/B978-0-12-394423-8.00007-X
12. Lopes, MFS, Carrilero, L, Gonzalez-Zorn, B (2012) Post-genomic strategies towards evaluation of pathogenicity potential, in Enterococcus and Safety, (T Semedo-Lemsaddek, T Crespo and R Tenreiro Eds.), Nova Science Publishers
13. Loureiro V, Ferreira MM, Monteiro S and Ferreira RB (2012) The Microbial Community of Grape Berry in The Biochemistry of the Grape Berry,(Gerós H, Chaves MM and Delrot S Eds.), pp. 241-268, Bentham Science Publishers
14. M.T. Barreto Crespo and P.I. Alves. (2012) Enterococci in food in Enterococcus and safety, (T. Semedo-Lemsaddek, M.T. Barreto-Crespo and R. Tenreiro Eds), pp 389-405, Series Advances in Food Safety and Food Microbiology, Nova Science Publishers, NY, USA
15. M.T. Barreto Crespo, R. Tenreiro and T. Semedo-Lemsaddek. (2012) Closing remarks: potential risks of enterococci to food safety regarding the 21ST century challenges in Enterococcus and safety, (T. Semedo-Lemsaddek, M.T. Barreto-Crespo and R. Tenreiro Eds.), 509-511, Series Advances in Food Safety and Food Microbiology, Nova Science Publishers, NY, USA.
16. Maria Rosário Bronze, Catarina M. M. Duarte, Ana Matias.(2012)  Stilbenes and Resveratrol in Handbook of Analysis of Active Compounds in Functional Foods,( Leo M. L. Nollet and Fidel Toldrá Eds.), CRC Press,  http://dx.doi.org/10.1201/b11653-22
17. Medrano, H, Gulías, J, Chaves, MM, Galmés, J, Flexas J. (2012), Photosynthetic water use efficiency  In Ecophysiology of photosynthesis in terrestrial higher plants ,(J Flexas, F Loreto & H Medrano Eds) pp 523-545, Cambridge University Press. Cambridge. UK, http://dx.doi.org/10.1017/CBO9781139051477.04
18. Miguel A. S., Maycock C. D. and Oliva A. G. (2012) Synthesis and functionalization of CdSe/ZnS QDs using the successive ion layer adsorption reaction and mercaptopropionic acid phase transfer methods, In Nanoparticles in Biology and Medicine : Methods and Protocols (M. Soloviev, Ed.), pp 143-55, Humana Press, Clifton, N.J (Methods in molecular biology 906) http://dx.doi.org/10.1007/978-1-61779-953-2_1
19. Oliveira, D. C., H. de Lencastre and A. Tomasz. (2012) Evolution of Molecular Techniques for the Characterization of MRSA Clones in Antibiotic Discovery and Development (T. Dougherty and M. Puci Eds.) pp. 571- 592, Springer Verlag
20. Peres C. M., Peres C. and Malcata F. X. (2012) Table olives in Mediterranean regions: economics, sustainability and environmental considerations focused on a traditional food supply chain, In Food supply: economics, sustainability and environmental effects (B. P. Hendriks, Ed.), Nova Science Publishers, Hauppauge NY, USA (Agricultural Research Updates)
21. Pessanha, M. and Archer, M. (2012) Membranas biológicas, In Biologia Celular e Molecular (Sunkel,C. and  Azevedo, C. Eds.), pp 43-57, Lidel, Portugal
22. Pintado C. J. M., Catulo L., Peres C. and Peres F. (2012) Oleuropein biodegradation by lactic acid bacteria isolated from table olives, In Acta Horticulturae (E. M. Sampaio and A. C. Pinheiro, Eds.), pp 469-473, International Society for Horticultural Science, Évora
23. Romão C. V., Archer M., Lobo S. A., Louro R. O., Pereira I. A. C., Saraiva L. M., Teixeira M. and Matias P. M. (2012) Diversity of heme proteins in sulfate reducing bacteria, In Handbook of porphyrin science: with applications to chemistry, physics, materials Science, engineering, biology and medicine (K. M. Kadish et al., Eds.), pp 139-230, World Scientific Publishing Co. Pte. Ltd., Singapore
24. S. Gorynia, T. M. Bandeiras, P. M. Matias, F. G. Pinho, C. E. McVey, P. Donner and M. A. Carrondo. (2012) RuvBL1 and RuvBL2 and Their Complex Proteins Implicated in Many Cellular Pathways in Macromolecular Crystallography,( M. A. Carrondo and P. Spadon, Eds.), pp 55-63, Springer, Dordrecht, The Netherlands
25. S. Sanches, J. Ricardo, M.C. Leitão, M.T. Barreto Crespo, V.J. Pereira. 2012. Determination of Polycyclic Aromatic Hydrocarbons in Drinking Water Sources in Handbook of Polycyclic Aromatic Hydrocarbons: Chemistry, Occurrence and Health Issues, (G.C. Bandeira and H.E. Meneses Eds.), Nova Science Publishers, NY, USA
26. Santos A. R., Miguel A. S., Fevereiro P. and Oliva A. G. (2012) Evaluation of cytotoxicity of 3-mercaptopropionic acid-modified quantum dots on Medicago sativa cells and tissues, In Nanoparticles in Biology and Medicine : Methods and Protocols (M. Soloviev, Ed.), pp 435-49, Humana Press, Clifton, N.J. (Methods in molecular biology 906) http://dx.doi.org/10.1007/978-1-61779-953-2_36
27. Santos F. L., F. M.-R., Cordeiro A. M. and Peres C. (2012) Following olive footprints in Portugal, In Following olive footprints (Olea europaea L.) - cultivation and culture, folklore and history, tradition and uses (M. EL-KHOLY, Ed.), pp 320-330, International Society for Horticultural Science (Scripta Horticulturae 13)
28. Soares R, Pires E, Almeida AM, Santos R, Gomes R, Koči K, Franco CF, Coelho AV.( 2012 ) Tandem Mass Spectrometry of peptides, In Applications of Tandem Mass Spectrometry- its Principles and Applications, (Jeevan K. Prasain Ed.), InTech
29. Tyrman SD, Chaves M, Barrieu F. (2012),  Water Relations of the grape berry and aquaporins In The Biochemistry of the Grape Berry (H. Gerós, M. Chaves, S. Delrot Eds.), pp 3-22, Bentham Science Publishers,http://dx.doi.org/10.2174/97816080536051120101