2013

Articles indexed in ISI Web of Science

1. Abecasis, A. B., Serrano, M., Alves, R., Quintais, L., Pereira-Leal, J. B., & Henriques, A. O. (2013). A Genomic Signature and the Identification of New Sporulation Genes. Journal of Bacteriology, 195(9), 2101-2115. doi:10.1128/jb.02110-12
2. Abrantes, M. C., Kok, J., & Lopes, M. D. (2013). EfaR Is a Major Regulator of Enterococcus faecalis Manganese Transporters and Influences Processes Involved in Host Colonization and Infection. Infection and Immunity, 81(3), 935-944.  doi:10.1128/iai.06377-11
3. Abreu, I. A., Farinha, A. P., Negrao, S., Goncalves, N., Fonseca, C., Rodrigues, M., Baptista R, Saibo NJM, Oliveira, M. M. (2013). Coping with abiotic stress: Proteome changes for crop improvement. Journal of Proteomics, 93, 145-168.   doi:10.1016/j.jprot.2013.07.014
4. Albuquerque, M. G. E., Carvalho, G., Kragelund, C., Silva, A. F., Crespo, M. T. B., Reis, M. A. M., & Nielsen, P. H. (2013). Link between microbial composition and carbon substrate-uptake preferences in a PHA-storing community. Isme Journal, 7(1), 1-12. doi:10.1038/ismej.2012.74
5. Almeida, A. P., Rodriguez-Rojo, S., Serra, A. T., Vila-Real, H., Simplicio, A. L., Delgadilho, I., da Costa, S.B., da Costa, L.B., Nogueira, I.D., Duarte, C. M. M. (2013). Microencapsulation of oregano essential oil in starch-based materials using supercritical fluid technology. Innovative Food Science & Emerging Technologies, 20, 140-145. doi:10.1016/j.ifset.2013.07.009
6. Almeida, B., Kjeldal, H., Lolas, I., Knudsen, A. D., Carvalho, G., Nielsen, K. L., Crespo, M.T.B., Stensballe, A., Nielsen, J. L. (2013). Quantitative proteomic analysis of ibuprofen-degrading Patulibacter sp strain I11. Biodegradation, 24(5), 615-630. doi:10.1007/s10532-012-9610-5
7. Almeida, B., Oehmen, A., Marques, R., Brito, D., Carvalho, G., & Crespo, M. T. B. (2013). Modelling the biodegradation of non-steroidal anti-inflammatory drugs (NSAIDs) by activated sludge and a pure culture. Bioresource Technology, 133, 31-37.  doi:10.1016/j.biortech.2013.01.035
8. Almeida, B., Vaz-Moreira, K., Schumann, P., Nunes, O. C., Carvalho, G., & Crespo, M. T. B. (2013). Patulibacter medicamentivorans sp nov., isolated from activated sludge of a wastewater treatment plant. International Journal of Systematic and Evolutionary Microbiology, 63, 2588-2593. doi: 10.1099/ijs.0.047522-0
9. Almeida, J. E., Ferreira, P., Alves, P., Lopes, A., & Gil, M. H. (2013). Synthesis of a dextran based thermo-sensitive drug delivery system by gamma irradiation. International Journal of Biological Macromolecules, 61, 150-155.  doi:10.1016/j.ijbiomac.2013.07.002
10. Almeida, S. T., de Lencastre, H., & Sa-Leao, R. (2013). Epidemiology and Population Structure of Serotypes 1, 5 and 7F Carried by Children in Portugal from 1996-2010 before Introduction of the 10-Valent and 13-Valent Pneumococcal Conjugate Vaccines. Plos One, 8(9). doi: 10.1371/journal.pone.0075442
11. Alves, F., Oliveira, F. S., Schroder, B., Matos, C., & Marrucho, I. M. (2013). Synthesis, characterization, and liposome partition of a novel tetracycline derivative using the ionic liquids framework. Journal of Pharmaceutical Sciences, 102(5), 1504-1512.  doi:10.1002/jps.23487
12. Alves, S. P., Bessa, R. J. B., Quaresma, M. A. G., Kilminster, T., Scanlon, T., Oldham, C., Milton, J., Greeff, J., Almeida, A. M. (2013). Does the Fat Tailed Damara Ovine Breed Have a Distinct Lipid Metabolism Leading to a High Concentration of Branched Chain Fatty Acids in Tissues? Plos One, 8(10), 9. doi:10.1371/journal.pone.0077313
13. Amaral, C., Pimentel, C., Matos, R. G., Arraiano, C. M., Matzapetakis, M., & Rodrigues-Pousada, C. (2013). Two Residues in the Basic Region of the Yeast Transcription Factor Yap8 Are Crucial for Its DNA-Binding Specificity. Plos One, 8(12), 12.                     doi:10.1371/journal.pone.0083328
14. Andrade, J. M., Pobre, V., & Arraiano, C. M. (2013). Small RNA Modules Confer Different Stabilities and Interact Differently with Multiple Targets. Plos One, 8(1), 15. doi:10.1371/journal.pone.0052866
15. Araujo, J. M. M., Pereiro, A. B., Alves, F., Marrucho, I. M., & Rebelo, L. P. N. (2013). Nucleic acid bases in 1-alkyl-3-methylimidazolium acetate ionic liquids: A thermophysical and ionic conductivity analysis. Journal of Chemical Thermodynamics, 57, 1-8. doi:10.1016/j.jct.2012.07.022
16. Araujo, J. M. M., Pereiro, A. B., Lopes, J. N. C., Rebelo, L. P. N., & Marrucho, I. M. (2013). Hydrogen-Bonding and the Dissolution Mechanism of Uracil in an Acetate Ionic Liquid: New Insights from NMR Spectroscopy and Quantum Chemical Calculations. Journal of Physical Chemistry B, 117(15), 4109-4120. doi:10.1021/jp400749j
17. Araujo, S. S., Duque, A. S., Silva, J. M., Santos, D., Silva, A. B., & Fevereiro, P. (2013). Water deficit and recovery response of Medicago truncatula plants expressing the ELIP-like DSP22. Biologia Plantarum, 57(1), 159-163.  doi:10.1007/s10535-012-0235-7
18. Arraiano, C. M., Mauxion, F., Viegas, S. C., Matos, R. G., & Seraphin, B. (2013). Intracellular ribonucleases involved in transcript processing and decay: Precision tools for RNA. Biochimica Et Biophysica Acta-Gene Regulatory Mechanisms, 1829(6-7), 491-513. doi:10.1016/j.bbagrm.2013.03.009
19. Bandeiras, T. M., Freitas, M. C., Petrasch, D., Kletzin, A., & Frazao, C. (2013). SAD phasing towards structure determination of a thermostable Rieske ferredoxin with a novel stabilizing disulfide bridge. Acta Crystallographica Section F-Structural Biology and Crystallization Communications, 69, 555-558. doi:10.1107/s1744309113008385
20. Barbas, A., Popescu, A., Frazao, C., Arraiano, C. M., & Fialho, A. M. (2013). Rossmann-fold motifs can confer multiple functions to metabolic enzymes: RNA binding and ribonuclease activity of a UDP-glucose dehydrogenase. Biochemical and Biophysical Research Communications, 430(1), 218-224. doi: 10.1016/j.bbrc.2012.10.091
21. Barria, C., Malecki, M., & Arraiano, C. M. (2013). Bacterial adaptation to cold. Microbiology-Sgm, 159, 2437-2443.     doi:10.1099/mic.0.052209-0
22. Barros, M. T., Dey, S. S., & Maycock, C. D. (2013). Metal-Free Synthesis of Secondary Arylamines: An Aliphatic-to-Aromatic Transformation. European Journal of Organic Chemistry(4), 742-747. doi: 10.1002/ejoc.201201263
23. Barros, S. C., Louro, R. O., Micaelo, N. M., Martins, J. A., Marcos, J. C., & Cavaco-Paulo, A. (2013). NMR and molecular modelling studies on elastase inhibitor-peptides for wound management. Reactive & Functional Polymers, 73(10), 1357-1365. doi:10.1016/j.reactfunctpolym.2013.02.011
24. Bartels, M. D., Boye, K., Oliveira, D. C., Worning, P., Goering, R., & Westh, H. (2013). Associations between dru Types and SCCmec Cassettes. Plos One, 8(4), 6. doi:10.1371/journal.pone.0061860
25. Batista, A. P., Marreiros, B. C., & Pereira, M. M. (2013). The antiporter-like subunit constituent of the universal adaptor of complex I, group 4 membrane-bound NiFe -hydrogenases and related complexes. Biological Chemistry, 394(5), 659-666.  doi:10.1515/hsz-2012-0342
26. Batista-Nascimento, L., Toledano, M. B., Thiele, D. J., & Rodrigues-Pousada, C. (2013). Yeast protective response to arsenate involves the repression of the high affinity iron uptake system. Biochimica Et Biophysica Acta-Molecular Cell Research, 1833(5), 997-1005. doi:10.1016/j.bbamcr.2012.12.018
27. Bernardes, N., Ribeiro, A. S., Abreu, S., Mota, B., Matos, R. G., Arraiano, C. M., Seruca, R., Paredes, J., Fialho, A. M. (2013). The Bacterial Protein Azurin Impairs Invasion and FAK/Src Signaling in P-Cadherin-Overexpressing Breast Cancer Cell Models. Plos One, 8(7), 8. doi:10.1371/journal.pone.0069023
28. Bleoanca, I., Silva, A. R. C., Pimentel, C., Rodrigues-Pousada, C., & Menezes, R. D. (2013). Relationship between ethanol and oxidative stress in laboratory and brewing yeast strains. Journal of Bioscience and Bioengineering, 116(6), 697-705.  doi:10.1016/j.jbiosc.2013.05.037
29. Borges, A. F., Ferreira, R. B., & Monteiro, S. (2013). Transcriptomic changes following the compatible interaction Vitis vinifera-Erysiphe necator. Paving the way towards an enantioselective role in plant defence modulation. Plant Physiology and Biochemistry, 68, 71-80. doi:10.1016/j.plaphy.2013.03.024
30. Braga, T. M., Pomba, C., & Lopes, M. F. S. (2013). High-level vancomycin resistant Enterococcus faecium related to humans and pigs found in dust from pig breeding facilities. Veterinary Microbiology, 161(3-4), 344-349. doi:10.1016/j.vetmic.2012.07.034
31. Brito, P. H., Rocha, E. P. C., Xavier, K. B., & Gordo, I. (2013). Natural Genome Diversity of AI-2 Quorum Sensing in Escherichia coli: Conserved Signal Production but Labile Signal Reception. Genome Biology and Evolution, 5(1), 16-30. doi:10.1093/gbe/evs122
32. Cabrita, P., Batista, S., Machado, H., Moes, S., Jeno, P., Manadas, B., Trigo, M.J., Monteiro, S., Ferreira, R.B., Brito, L. (2013). Comparative Analysis of the Exoproteomes of Listeria monocytogenes Strains Grown at Low Temperatures. Foodborne Pathogens and Disease, 10(5), 428-434. doi:10.1089/fpd.2012.1385
33. Campos, A., Puerto, M., Prieto, A., Camean, A., Almeida, A. M., Coelho, A. V., & Vasconcelos, V. (2013). Protein extraction and two-dimensional gel electrophoresis of proteins in the marine mussel Mytilus galloprovincialis: an important tool for protein expression studies, food quality and safety assessment. Journal of the Science of Food and Agriculture, 93(7), 1779-1787.  doi:10.1002/jsfa.5977
34. Campos, E., Branquinho, J., Carreira, A. S., Carvalho, A., Coimbra, P., Ferreira, P., & Gil, M. H. (2013). Designing polymeric microparticles for biomedical and industrial applications. European Polymer Journal, 49(8), 2005-2021. doi:10.1016/j.eurpolymj.2013.04.033
35. Campos, E., Coimbra, P., & Gil, M. H. (2013). An improved method for preparing glutaraldehyde cross-linked chitosan-poly(vinyl alcohol) microparticles. Polymer Bulletin, 70(2), 549-561. doi:10.1007/s00289-012-0853-4
36. Campos, E., McVey, C. E., Carney, R. P., Stellacci, F., Astier, Y., & Yates, J. (2013). Sensing Single Mixed-Monolayer Protected Gold Nanoparticles by the alpha-Hemolysin Nanopore. Analytical Chemistry, 85(21), 10149-10158. doi:10.1021/ac4014836
37. Carinhas, N., Duarte, T. M., Barreiro, L. C., Carrondo, M. J. T., Alves, P. M., & Teixeira, A. P. (2013). Metabolic Signatures of GS-CHO Cell Clones Associated With Butyrate Treatment and Culture Phase Transition. Biotechnology and Bioengineering, 110(12), 3244-3257. doi: 10.1002/bit.24983
38. Carney, R. P., Astier, Y., Carney, T. M., Voitchovsky, K., Silva, P. H. J., & Stellacci, F. (2013). Electrical Method to Quantify Nanoparticle Interaction with Lipid Bilayers. Acs Nano, 7(2), 932-942. doi:10.1021/nn3036304
39. Carvalheda, C. A., Campos, S. R. R., Machuqueiro, M., & Baptista, A. M. (2013). Structural Effects of pH and Deacylation on Surfactant Protein C in an Organic Solvent Mixture: A Constant-pH MD Study. Journal of Chemical Information and Modeling, 53(11), 2979-2989. doi: 10.1021/ci400479c
40. Carvalho, A. L., Turner, D. L., Fonseca, L. L., Solopova, A., Catarino, T., Kuipers, O. P., Voit, E.O., Neves, A.R., Santos, H. (2013). Metabolic and Transcriptional Analysis of Acid Stress in Lactococcus lactis, with a Focus on the Kinetics of Lactic Acid Pools. Plos One, 8(7). doi:10.1371/journal.pone.0068470
41. Carvalho, M. B., Martins, I., Medeiros, J., Tavares, S., Planchon, S., Renaut, J., Nunez, O., Gallart-Ayala, H., Galceran, M.T., Hursthouse, A., Pereira, C. S. (2013). The response of Mucor plumbeus to pentachlorophenol: A toxicoproteomics study. Journal of Proteomics, 78, 159-171. doi:10.1016/j.jprot.2012.11.006
42. Carvalho, S. B., Botelho, H. M., Leal, S. S., Cardoso, I., Fritz, G., & Gomes, C. M. (2013). Intrinsically Disordered and Aggregation Prone Regions Underlie beta-Aggregation in S100 Proteins. Plos One, 8(10), 11. doi:10.1371/journal.pone.0076629
43. Carvalho, S. M., Andisi, V. F., Gradstedt, H., Neef, J., Kuipers, O. P., Neves, A. R., & Bijlsma, J. J. E. (2013). Pyruvate Oxidase Influences the Sugar Utilization Pattern and Capsule Production in Streptococcus pneumoniae. Plos One, 8(7). doi:10.1371/journal.pone.0068277
44. Carvalho, S. M., Kuipers, O. P., & Neves, A. R. (2013). Environmental and Nutritional Factors That Affect Growth and Metabolism of the Pneumococcal Serotype 2 Strain D39 and Its Nonencapsulated Derivative Strain R6. Plos One, 8(3), 15.  doi:10.1371/journal.pone.0058492
45. Cerca, N., Gomes, F., Bento, J. C., Franca, A., Rolo, J., Miragaia, M., Teixeira, P., Oliveira, R. (2013). Farnesol induces cell detachment from established S. epidermidis biofilms. Journal of Antibiotics, 66(5), 255-258. doi:10.1038/ja.2013.11
46. Chen, P. W., Fonseca, L. L., Hannun, Y. A., & Voit, E. O. (2013). Coordination of Rapid Sphingolipid Responses to Heat Stress in Yeast. Plos Computational Biology, 9(5). doi:10.1371/journal.pcbi.1003078
47. Codola, Z., Cardoso, J. M. S., Royo, B., Costas, M., & Lloret-Fillol, J. (2013). Highly Effective Water Oxidation Catalysis with Iridium Complexes through the Use of NaIO4. Chemistry-a European Journal, 19(22), 7203-7213. doi: 10.1002/chem.201204568
48. Coecke, S., Pelkonen, O., Leite, S. B., Bernauer, U., Bessems, J. G. M., Bois, F. Y., Gundert-Remy, U., Loizou, G., Testai, E., Zaldivar, J. M. (2013). Toxicokinetics as a key to the integrated toxicity risk assessment based primarily on non-animal approaches. Toxicology in Vitro, 27(5), 1570-1577. doi:10.1016/j.tiv.2012.06.012
49. Coelho, D. S., Cairrao, F., Zeng, X. M., Pires, E., Coelho, A. V., Ron, D., Ryoo, H.D., Domingos, P. M. (2013). Xbp1-Independent Ire1 Signaling Is Required for Photoreceptor Differentiation and Rhabdomere Morphogenesis in Drosophila. Cell Reports, 5(3), 791-801. doi: 10.1016/j.celrep.2013.09.046
50. Conceicao, T., Diamantino, F., Coelho, C., de Lencastre, H., & Aires-de-Sousa, M. (2013). Contamination of Public Buses with MRSA in Lisbon, Portugal: A Possible Transmission Route of Major MRSA Clones within the Community. Plos One, 8(11), 6. : doi:10.1371/journal.pone.0077812
51. Correia, B., Cerqueira, S. A., Beauchemin, C., de Miranda, M. P., Li, S. J., Ponnusamy, R., Rodrigues, L., Schneider, T.R., Carrondo, M.A., Kaye, K.M., Simas, J.P.,  McVey, C. E. (2013). Crystal Structure of the Gamma-2 Herpesvirus LANA DNA Binding Domain Identifies Charged Surface Residues Which Impact Viral Latency. Plos Pathogens, 9(10), 16. doi: 10.1371/journal.ppat.1003673
52. Correia, V. G., Coelho, M., Barroso, T., Raje, V. P., Bonifacio, V. D. B., Casimiro, T., Pinho, M.G., Aguiar-Ricardo, A. (2013). Anti-biofouling 3D porous systems: the blend effect of oxazoline-based oligomers on chitosan scaffolds. Biofouling, 29(3), 273-282. doi:10.1080/08927014.2013.766172
53. Costa, A. J. L., Soromenho, M. R. C., Shimizu, K., Esperanca, J., Lopes, J. N. C., & Rebelo, L. P. N. (2013). Unusual LCST-type behaviour found in binary mixtures of choline-based ionic liquids with ethers. Rsc Advances, 3(26), 10262-10271. doi:10.1039/c3ra40327k
54. Costa, J. M., Grant, O. M., & Chaves, M. M. (2013). Thermography to explore plant-environment interactions. Journal of Experimental Botany, 64(13), 3937-3949. doi:10.1093/jxb/ert029
55. Couto, N., Belas, A., Tilley, P., Couto, I., Gama, L. T., Kadlec, K., Schwarz, S., Pomba, C. (2013). Biocide and antimicrobial susceptibility of methicillin-resistant staphylococcal isolates from horses. Veterinary Microbiology, 166(1-2), 299-303. doi:10.1016/j.vetmic.2013.05.011
56. Cristovao, J. S., Leal, S. S., Cardoso, I., & Gomes, C. M. (2013). Small Molecules Present in the Cerebrospinal Fluid Metabolome Influence Superoxide Dismutase 1 Aggregation. International Journal of Molecular Sciences, 14(9), 19128-19145.                       doi:10.3390/ijms140919128
57. Cruz, M. M., Borges, R. P., Godinho, M., Marques, C. S., Langa, E., Ribeiro, A. P. C., Lourenco, M.J.V., Santos, F.J.V., de Castro, C.A.N., Macatrao, M., Tariq M., Esperanca, J.M.S.S., Lopes, J.N.C., Afonso, C.A.M., Rebelo, L. P. N. (2013). Thermophysical and magnetic studies of two paramagnetic liquid salts: C(4)mim FeCl4 and P-66614 FeCl4. Fluid Phase Equilibria, 350, 43-50. doi:10.1016/j.fluid.2013.03.001
58. Cunha, B. M. P., Trindade, I. N., Couto, N. A. S., Costa, P. J., Rodrigues, P., Barros, M. T., Costa, M.L., Duarte, M.F., Fernandez, M.T., Madeira, P. J. A. (2013). Gas-phase interaction between nickel (II) and nitrobenzyl azides: An ESI-MSn study. International Journal of Mass Spectrometry, 351, 27-36. doi: 10.1016/j.ijms.2013.05.012
59. Cunha, S., d'Avo, A. F., Mingote, A., Lamosa, P., da Costa, M. S., & Costa, J. (2013). Mannosylglucosylglycerate biosynthesis in the deep-branching phylum Planctomycetes: characterization of the uncommon enzymes from Rhodopirellula baltica. Scientific Reports, 3. doi: 10.1038/srep02378
60. d'Avo, A. F., Cunha, S., Mingote, A., Lamosa, P., da Costa, M. S., & Costa, J. (2013). A Unique Pool of Compatible Solutes on Rhodopirellula baltica, Member of the Deep-Branching Phylum Planctomycetes. Plos One, 8(6).  doi:10.1371/journal.pone.0068289
61. da Silva, S. M., Voordouw, J., Leitao, C., Martins, M., Voordouw, G., & Pereira, I. A. C. (2013). Function of formate dehydrogenases in Desulfovibrio vulgaris Hildenborough energy metabolism. Microbiology-Sgm, 159, 1760-1769. doi: 10.1099/mic.0.067868-0
62. Damas, J. M., Filipe, L. C. S., Campos, S. R. R., Lousa, D., Victor, B. L., Baptista, A. M., & Soares, C. M. (2013). Predicting the Thermodynamics and Kinetics of Helix Formation in a Cyclic Peptide Model. Journal of Chemical Theory and Computation, 9(11), 5148-5157. doi: 10.1021/ct400529k
63. Dantas, J. M., Morgado, L., Pokkuluri, P. R., Turner, D. L., & Salgueiro, C. A. (2013). Solution structure of a mutant of the triheme cytochrome PpcA from Geobacter sulfurreducens sheds light on the role of the conserved aromatic residue F15. Biochimica Et Biophysica Acta-Bioenergetics, 1827(4), 484-492. doi: 10.1016/j.bbabio.2012.12.008
64. David, T. S., Pinto, C. A., Nadezhdina, N., Kurz-Besson, C., Henriques, M. O., Quilho, T., Cermak, J., Chaves, M.M., Pereira, J.S.,  David, J. S. (2013). Root functioning, tree water use and hydraulic redistribution in Quercus suber trees: A modeling approach based on root sap flow. Forest Ecology and Management, 307, 136-146. doi: 10.1016/j.foreco.2013.07.012
65. De Angeli, A., Baetz, U., Francisco, R., Zhang, J. B., Chaves, M. M., & Regalado, A. (2013). The vacuolar channel VvALMT9 mediates malate and tartrate accumulation in berries of Vitis vinifera. Planta, 238(2), 283-291. doi: 10.1007/s00425-013-1888-y
66. de los Mozos, I. R., Vergara-Irigaray, M., Segura, V., Villanueva, M., Bitarte, N., Saramago, M., Domingues, S., Arraiano, C.M., Fechter, P., Romby, P., Valle, J., Solano, C., Lasa, I., Toledo-Arana, A. (2013). Base Pairing Interaction between 5 '- and 3 '-UTRs Controls icaR mRNA Translation in Staphylococcus aureus. Plos Genetics, 9(12), 18. doi:10.1371/journal.pgen.1004001
67. de Miranda, M. P., Lopes, F. B., McVey, C. E., Bustelo, X. R., & Simas, J. P. (2013). Role of Src Homology Domain Binding in Signaling Complexes Assembled by the Murid gamma-Herpesvirus M2 Protein. Journal of Biological Chemistry, 288(6), 3858-3870. : doi:10.1074/jbc.M112.439810
68. de Vega-Bartol, J. J., Santos, R. R., Simoes, M., & Miguel, C. M. (2013). Normalizing gene expression by quantitative PCR during somatic embryogenesis in two representative conifer species: Pinus pinaster and Picea abies. Plant Cell Reports, 32(5), 715-729. doi:10.1007/s00299-013-1407-4
69. de Vega-Bartol, J. J., Simoes, M., Lorenz, W. W., Rodrigues, A. S., Alba, R., Dean, J. F. D., & Miguel, C. M. (2013). Transcriptomic analysis highlights epigenetic and transcriptional regulation during zygotic embryo development of Pinus pinaster. Bmc Plant Biology, 13. doi:10.1186/1471-2229-13-123
70. Deb, M. L., Dey, S. S., Bento, I., Barros, M. T., & Maycock, C. D. (2013). Copper-Catalyzed Regioselective Intramolecular Oxidative alpha-Functionalization of Tertiary Amines: An Efficient Synthesis of Dihydro-1,3-Oxazines. Angewandte Chemie-International Edition, 52(37), 9791-9795. doi: 10.1002/anie.201304654
71. Domingues, S., Aires, A. C., Mohedano, M. L., Lopez, P., & Arraiano, C. M. (2013). A new tool for cloning and gene expression in Streptococcus pneumoniae. Plasmid, 70(2), 247-253. doi:10.1016/j.plasmid.2013.05.005
72. dos Santos, R., Rocha, A., Matias, A., Duarte, C., Sa-Nogueira, I., Lourenco, N., Borges, J.P., Vidinha, P. (2013). Development of antimicrobial Ion Jelly fibers. Rsc Advances, 3(46), 24400-24405. doi:10.1039/c3ra44258f
73. Escrevente, C., Grammel, N., Kandzia, S., Zeiser, J., Tranfield, E. M., Conradt, H. S., & Costa, J. (2013). Sialoglycoproteins and N-Glycans from Secreted Exosomes of Ovarian Carcinoma Cells. Plos One, 8(10), 11. doi:10.1371/journal.pone.0078631
74. Espadinha, D., Faria, N. A., Miragaia, M., Lito, L. M., Melo-Cristino, J., de Lencastre, H., & Medicos Sentinela, N. (2013). Extensive Dissemination of Methicillin-Resistant Staphylococcus aureus (MRSA) between the Hospital and the Community in a Country with a High Prevalence of Nosocomial MRSA. Plos One, 8(4), 8. doi:10.1371/journal.pone.0059960
75. Esteves, C. V., Lamosa, P., Delgado, R., Costa, J., Desogere, P., Rousselin, Y., Goze, C., Denat, F. (2013). Remarkable Inertness of Copper(II) Chelates of Cyclen-Based Macrobicycles with Two trans-N-Acetate Arms. Inorganic Chemistry, 52(9), 5138-5153.  doi:10.1021/ic400015v
76. Esteves, C. V., Lima, L. M. P., Mateus, P., Delgado, R., Brandao, P., & Felix, V. (2013). Cyclen derivatives with two trans-methylnitrophenolic pendant arms: a structural study of their copper(II) and zinc(II) complexes. Dalton Transactions, 42(17), 6149-6160. doi:10.1039/c2dt32363j
77. Farha, M. A., Leung, A., Sewell, E. W., D'Elia, M. A., Allison, S. E., Ejim, L., Pereira, P.M., Pinho, M.G., Wright, G.D.,. Brown, E. D. (2013). Inhibition of WTA Synthesis Blocks the Cooperative Action of PBPs and Sensitizes MRSA to beta-Lactams. Acs Chemical Biology, 8(1), 226-233.  doi:10.1021/cb300413m
78. Faria, C., Jorge, C. D., Borges, N., Tenreiro, S., Outeiro, T. F., & Santos, H. (2013). Inhibition of formation of alpha-synuclein inclusions by mannosylglycerate in a yeast model of Parkinson's disease. Biochimica Et Biophysica Acta-General Subjects, 1830(8), 4065-4072. doi:10.1016/j.bbagen.2013.04.015
79. Faria, N. A., Miragaia, M., de Lencastre, H., & Multi Lab Project, C. (2013). Massive Dissemination of Methicillin Resistant Staphylococcus aureus in Bloodstream Infections in a High MRSA Prevalence Country: Establishment and Diversification of EMRSA-15. Microbial Drug Resistance, 19(6), 483-490. doi:10.1089/mdr.2013.0149
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231. Serra, T. S., Figueiredo, D. D., Cordeiro, A. M., Almeida, D. M., Lourenco, T., Abreu, I. A., Sebastian, A., Fernandes, L., Contreras-Moreira, B., Oliveira, M.M., Saibo, N. J. M. (2013). OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors. Plant Molecular Biology, 82(4-5), 439-455. doi: 10.1007/s11103-013-0073-9
232. Sezer, M., Santos, A., Kielb, P., Pinto, T., Martins, L. O., & Todorovic, S. (2013). Distinct Structural and Redox Properties of the Heme Active Site in Bacterial Dye Decolorizing Peroxidase-Type Peroxidases from Two Subfamilies: Resonance Raman and Electrochemical Study. Biochemistry, 52(18), 3074-3084.  doi:10.1021/bi301630a
233. Shahriari, S., Tome, L. C., Araujo, J. M. M., Rebelo, L. P. N., Coutinho, J. A. P., Marrucho, I. M., & Freire, M. G. (2013). Aqueous biphasic systems: a benign route using cholinium-based ionic liquids. Rsc Advances, 3(6), 1835-1843. doi:10.1039/c2ra22972b
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247. Tariq, M., Esperanca, J., Rebelo, L. P. N., & Lopes, J. N. C. (2013). Probing Ionic Liquid Aqueous Solutions Using Temperature of Maximum Density Isotope Effects. Molecules, 18(4), 3703-3711. doi: 10.3390/molecules18043703
248. Tariq, M., Esperanca, J., Soromenho, M. R. C., Rebelo, L. P. N., & Lopes, J. N. C. (2013). Shifts in the temperature of maximum density (TMD) of ionic liquid aqueous solutions. Physical Chemistry Chemical Physics, 15(26), 10960-10970. doi:10.1039/c3cp50387a
249. Tariq, M., Moscoso, F., Deive, F. J., Rodriguez, A., Sanroman, M. A., Esperanca, J., Lopes, J.N.C., Rebelo, L. P. N. (2013). Probing the self-aggregation of ionic liquids in aqueous solutions using density and speed of sound data. Journal of Chemical Thermodynamics, 59, 43-48. doi: 10.1016/j.jct.2012.11.032
250. Tavares, A., Miragaia, M., Rolo, J., Coelho, C., de Lencastre, H., & Grp, C.-M. M. W. (2013). High prevalence of hospital-associated methicillin-resistant Staphylococcus aureus in the community in Portugal: evidence for the blurring of community-hospital boundaries. European Journal of Clinical Microbiology & Infectious Diseases, 32(10), 1269-1283. doi:10.1007/s10096-013-1872-2
251. Tavares, A. F., Parente, M. R., Justino, M. C., Oleastro, M., Nobre, L. S., & Saraiva, L. M. (2013). The Bactericidal Activity of Carbon Monoxide-Releasing Molecules against Helicobacter pylori. Plos One, 8(12), 9. doi:10.1371/journal.pone.0083157
252. Tavares, L., Figueira, I., McDougall, G. J., Vieira, H. L. A., Stewart, D., Alves, P. M., Ferreira, R.B., Santos, C. N. (2013). Neuroprotective effects of digested polyphenols from wild blackberry species. European Journal of Nutrition, 52(1), 225-236. doi:10.1007/s00394-012-0307-7
253. Tavares, L., Pimpao, R., McDougall, G., Stewart, D., Ferreira, R. B., & Santos, C. N. (2013). Elucidating Phytochemical Production in Juniperus sp.: Seasonality and Response to Stress Situations. Journal of Agricultural and Food Chemistry, 61(17), 4044-4052.  doi:10.1021/jf304752q
254. Tavares, S., Vesentini, D., Fernandes, J. C., Ferreira, R. B., Laureano, O., Ricardo-Da-Silva, J. M., & Amancio, S. (2013). Vitis vinifera secondary metabolism as affected by sulfate depletion: Diagnosis through phenylpropanoid pathway genes and metabolites. Plant Physiology and Biochemistry, 66, 118-126. doi:10.1016/j.plaphy.2013.01.022
255. Tavares, T. G., Spindola, H., Longato, G., Pintado, M. E., Carvalho, J. E., & Malcata, F. X. (2013). Antinociceptive and anti-inflammatory effects of novel dietary protein hydrolysate produced from whey by proteases of Cynara cardunculus. International Dairy Journal, 32(2), 156-162. doi: 0.1016/j.idairyj.2013.05.010
256. Teixeira, N., Varahan, S., Gorman, M. J., Palmer, K. L., Zaidman-Remy, A., Yokohata, R., Nakayama, J., Hancock, L.E., Jacinto, A., Gilmore, M.S., Lopes, M. D. S. (2013). Drosophila Host Model Reveals New Enterococcus faecalis Quorum-Sensing Associated Virulence Factors. Plos One, 8(5), 12. doi:10.1371/journal.pone.0064740
257. Thorsing, M., Klitgaard, J. K., Atilano, M. L., Skov, M. N., Kolmos, H. J., Filipe, S. R., & Kallipolitis, B. H. (2013). Thioridazine Induces Major Changes in Global Gene Expression and Cell Wall Composition in Methicillin-Resistant Staphylococcus aureus USA300. Plos One, 8(5). doi:10.1371/journal.pone.0064518
258. Tome, L. C., Aboudzadeh, M. A., Rebelo, L. P. N., Freire, C. S. R., Mecerreyes, D., & Marrucho, I. M. (2013). Polymeric ionic liquids with mixtures of counter-anions: a new straightforward strategy for designing pyrrolidinium-based CO2 separation membranes. Journal of Materials Chemistry A, 1(35), 10403-10411. doi: 10.1039/c3ta12174g
259. Tome, L. C., Fernandes, S. C. M., Perez, D. S., Sadocco, P., Silvestre, A. J. D., Neto, C. P., Marrucho, I.M., Freire, C. S. R. (2013). The role of nanocellulose fibers, starch and chitosan on multipolysaccharide based films. Cellulose, 20(4), 1807-1818. doi:10.1007/s10570-013-9959-6
260. Tome, L. C., Mecerreyes, D., Freire, C. S. R., Rebelo, L. P. N., & Marrucho, I. M. (2013). Pyrrolidinium-based polymeric ionic liquid materials: New perspectives for CO2 separation membranes. Journal of Membrane Science, 428, 260-266. doi:10.1016/j.memsci.2012.10.044
261. Tome, L. C., Patinha, D. J. S., Freire, C. S. R., Rebelo, L. P. N., & Marrucho, I. M. (2013). CO2 separation applying ionic liquid mixtures: the effect of mixing different anions on gas permeation through supported ionic liquid membranes. Rsc Advances, 3(30), 12220-12229. doi:10.1039/c3ra41269e
262. Turner, D. L., Lamosa, P., Rodriguez, A., & Martinez, B. (2013). Structure and properties of the metastable bacteriocin Lcn972 from Lactococcus lactis. Journal of Molecular Structure, 1031, 207-210. doi: 10.1016/j.molstruc.2012.09.076
263. Valente, C., de Lencastre, H., & Sa-Leao, R. (2013). Selection of Distinctive Colony Morphologies for Detection of Multiple Carriage of Streptococcus pneumoniae. Pediatric Infectious Disease Journal, 32(6), 703-704. doi:10.1097/INF.0b013e31828692be
264. Varela-Raposo, A., Pimentel, C., Morais-Silva, F., Rezende, A., Ruiz, J. C., & Rodrigues-Pousada, C. (2013). Role of NorR-like transcriptional regulators under nitrosative stress of the delta-proteobacterium, Desulfovibrio gigas. Biochemical and Biophysical Research Communications, 431(3), 590-596. doi:10.1016/j.bbrc.2012.12.130
265. Varona, S., Martin, A., Cocero, M. J., & Duarte, C. M. M. (2013). Encapsulation of Lavandin Essential Oil in Poly-(epsilon-caprolactones) by PGSS Process. Chemical Engineering & Technology, 36(7), 1187-1192. doi: 10.1002/ceat.201200592
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267. Venceslau, S. S., Cort, J. R., Baker, E. S., Chu, R. K., Robinson, E. W., Dahl, C., Saraiva, L.M., Pereira, I. A. C. (2013). Redox states of Desulfovibrio vulgaris DsrC, a key protein in dissimilatory sulfite reduction. Biochemical and Biophysical Research Communications, 441(4), 732-736. doi: 10.1016/j.bbrc.2013.10.116
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Other Articles:

1. Almeida B, Fernandes S, Abreu IA, Macedo-Ribeiro S. (2013) Trinucleotide repeats: a structural perspective. Front Neurol. 20;(4):76-.doi:10.3389/fneur.2013.00076

2. Fernandes P, Castro R, Alves PM, Carrondo MJT e Coroadinha AS (2013) Terapia génica e desafios no desenvolvimento de vectores virais. Boletin Biotecnologia, 2(4), 21-23, Novembro 2013.

3. Gomes A, Fortalezas S, Pimpão R, Figueira I, Maroco J, Aguiar C, Ferreira RB, Miguel C, Santos CN (2013) Valuing the Endangered Species Antirrhinum lopesianum: Neuroprotective Activities and Strategies for in vitro Plant Propagation. Antioxidants 2(4):273-292. doi:10.3390/antiox2040273

4. Gouveia, C.; Gavino A., Bouchami O.,Miragaia M.,Varandas L.,Lencastre H., and Brito M.J.(2013). Community-Associated Methicillin-Resistant Staphylococcus aureus Lacking PVL, as a Cause of Severe Invasive Infection Treated with Linezolid. Case reports in Pediatrics. doi:10.1155/2013/727824

5. Milheiriço, C. (2013)Identification and characterization of a new methicillin genetic determinant in Staphylococcus aureus. SPM magazine. Ano 2. Número 2. http://magazinespm.pt/

6. Oliveira M, J.Pereira, S.C.Verde, M.G.Lima, P.Pinto, P.B. de Oliveira, C. Junqueira, H.Marcos, T.Silva, R.Melo, C.N.Santos, M. L. Botelho, (2013) Evaluation of potential of gamma radiation as a conservation treatment for blackberry fruits. J Berry Research, 3,93-102.doi:10.3233/JBR-130050

7. Pereira I.A.C. (2013) An Enzymatic Route to H2 Storage.Science, 342, 1329-1330. doi:10.1126/science.1247698

8. Ponnusamy R, Lohkamp B. (2013). Insights into the oligomerization of CRMPs: crystal structure of human collapsin response mediator protein 5. J Neurochem. 2013 Jun; 125(6):855-68. doi: 10.1111/jnc.12188

9. Quiblier C., A. Luczak-Kadlubowska, E. Holdener, D. Alborn, T. Schneider, I. Wiedemann, M.G. Pinho, H-G. Sahl, S. Rohrer, B. Berger-Bächi, Maria M. Senn (2013) The Staphylococcus aureus membrane protein SA2056 interacts with peptidoglycan synthesis enzymes. Antibiotics 2: 11-27.doi:10.3390/antibiotics2010011

10. Rosa LF, Neto SN, Alves AS, Louro RO, (2013). Electrocatálise Microbiana: Uma plataforma versátil para processos industriais sustentáveis, Boletim Biotecnologia, 3.

11. Sá-Moura B., AM Simões, J Fraga, H Fernandes, IA Abreu, HM Botelho, CM Gomes, AJ Marques, RJ Dohmen, PC Ramos, S Macedo-Ribeiro (2013) Biochemical and Biophysical Characterization of Recombinant Yeast Proteasome Maturation Factor Ump1. Comput Struct Biotechnol J. 7: e201304006. doi:10.5936/csbj.201304006

12. Schyns, G., C. Serra, A.O. Henriques, A. Arquelles-Arias, B. Joris, and P. Fickers, (2013). Isolation of the antimicrobial cyclic peltide subtilosin A from a gut-associated Bacillus subtilis strain. Amer. J. Biochem. Biotechnol. 9(3):307-317.doi:0.3844/ajbbsp.2013.307.317

13. Sebastiana, M., Figueiredo A., Monteiro F.,Martins J., Franco C., Coelho A.V.,Vaz F.,Simões T.,Penque D.,Pais M.;Ferreira S. (2013). A possible approach for gel-based proteomic studies in recalcitrant woody plants, SpringerPlus 2(1) . doi:10.1186/2193-1801-2-210

14. Simão D, Pinto C, Serra M, Brito C, Alves PM. (2013). Sistemas de cultura 3D para diferenciação neural de células estaminais humanas. Boletim Biotecnologia, 2(4), 17-20, Novembro 2013.

Book(edited)

1. Coelho Av. and Franco C. (Eds.) (2013) Applications of Tandem Mass Spectrometry- its Principles and Applications.  InTech. ISBN:978-953-51-0141-3

2. Louro, Ricardo O. and Crichton,  Robert R. (Eds.) (2013) Practical Approaches to Biological Inorganic Chemistry. Elsevier B.V. Amsterdam, The Netherlands. ISBN:987-0-444-56351-4

Book Chapters

1. Carvalho SB, Cardoso I, Botelho HM, Yanamandra K, Fritz G., Gomes C M and Morozova-Roche (2013) "Structural heterogeneity and bioimaging of S100 amyloid assemblies". In Bio-nanoimaging: protein misfolding and aggregation (V. N. Uversky and Y. N. Lyubchenko eds.), pp. 197-212. Academic Press

2. Duque A.S., Almeida A.M., Silva A.B., Silva J.M., Farinha A.P., Santos D., Fevereiro P., Araújo S.S. (2013)" Abiotic stress responses in plants: unraveling the complexity of genes and networks to survive." In Abiotic Stress - Plant Responses and Applications in Agriculture, (K. Vahdati and C. Leslie, eds.) pp. 49-101 . InTech. doi:10.5772/52779

3. Kandzia, S., Costa, J. (2013) "N-Glycosylation Analysis by HPAEC-PAD and Mass Spectrometry" In Ovarian Cancer: Methods and Protocols, Methods in Molecular Biology, (Anastasia Malek and Oleg Tchernitsa eds.), pp. 301-312, vol. 1049, Springer Science+Business Media, New York.

4. Laires R., Koci K., Pires E., Franco C., Lamosa P., Coelho A.V. (2013). Tandem MS and NMR: An Efficient Couple for the Characterization of Saponins. In Applications of Tandem Mass Spectrometry- its Principles and Applications, (Coelho A.V. and Franco C. Eds.) pp.117-135, InTech. Available from: http://www.intechopen.com/books/tandem-mass-spectrometry-molecular-characterization/

5. Louro RO. (2013) "Introduction to Biomolecular NMR and Metals" In Practical Approaches to Biological Inorganic Chemistry, (Ricardo O.Louro and Robert R. Crichton eds.) pp.77-107, Elsevier B. V. Amsterdam, The Netherlands. doi:10.1016/B978-0-444-56351-4.00004-X

6. Louro RO. and Robert R. Crichton (2013) "Other Spectroscopic Methods for Probing Metal Centres in Biological Systems" In Practical Approaches to Biological Inorganic Chemistry, (Ricardo O. Louro and Robert R. Crichton Eds) pp.161-167, Elsevier B. V. Amsterdam, The Netherlands. doi: 10.1016/B978-0-444-56351-4.00007-5

7. Pikula S., J. Bandorowicz-Pikula and P. Groves (2013) “NMR of lipids”. In Nuclear Magnetic Resonance, (Krystyna Kamienska-Trela, Jacek Wojcik Eds.)pp. 362-382, Royal Society of Chemistry press, UK. doi:10.1039/9781849737678

8. Romão, C. C. and Vieira H.L.A. (2013) "Metal Carbonyls for CO-based Therapies: challenges and successes". In Advances in Organometallic Chemistry and Catalysis: ICOMC Silver/Gold Jubilee Book.(A. J. L. Pombeiro Ed.) pp.545-561, J. Wiley. doi:10.1002/9781118742952.ch41

9. Royo, B (2013) "Cyclopentadienyl-functionalized N-Heterocyclic Carbene Complexes of Iron and Nickel: Catalysts for Reductions". In Advances in Organometallic Chemistry and Catalysis: ICOMC Silver/Gold Jubilee Book (A. J. L. Pombeiro Ed.) pp.133-145, J. Wiley

10. Serra M, Correia C, Brito C and Alves PM (2013) “Bioprocessing of Human Pluripotent Stem Cells for Cell Therapy Applications” - Chapter 4 (M. Al-Rubeai, M. Naciri (eds.), In Stem Cells and Cell Therapy, Cell Engineering 8, Springer Science, doi:10.1007/978-94-007-7196-3_4

11. Simplicio A.L.; Coroadinha A.S.; Gilmer J.F.; Lamego J.(2013) "A methodology for detection and quantification of esterase activity". In Methods in Molecular Biology,(Volpi N.,Maccari F. eds.) pp. 309-319, Springer Protocols. doi: 10.1007/978-1-62703-296-4_22

12. Tomás H, Rodrigues AF, Alves PM and Coroadinha AS. 2013. ‘Lentiviral gene therapy vectors: challenges and future directions’ In Gene Therapy - Tools and Potential Applications (Dr. Francisco Martin Ed.), ISBN: 978-953-51-1014-9, InTech.doi:10.5772/52534

13. Vaz Patto MC, Mendes-Moreira PM, Alves ML, Mecha E, Brites C, Bronze R, Pego S (2013) "Participatory plant quality breeding: An ancient art revisited by knowledge sharing.The Portuguese experience. In Plant Breeding From laboratories to Fields,(Andersen SB ed.), pp. 255-288. InTech. doi:10.5772/52951