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Papers

  • Lilay, Grmay H, Castro, Pedro Humberto, Guedes, Joana G, Almeida, Diego M, Campilho, Ana, Azevedo, Herlander, Aarts, Mark G M, Saibo, Nelson J M and Assunção, Ana G L (2020) Rice F-bZIP transcription factors regulate the zinc deficiency response. Journal of Experimental Botany, eraa115 [doi:10.1093/jxb/eraa115]
  • Ferreira, L.J., Donoghue, M.T.A., Barros, P., Saibo, N.J., Santos, A.P. and Oliveira, M.M. (2019) Uncovering Differentially Methylated Regions (DMRs) in a Salt-Tolerant Rice Variety under Stress: One Step towards New Regulatory Regions for Enhanced Salt Tolerance. Epigenomes 3(1), 4 [doi:10.3390/epigenomes3010004]
  • Rodrigues, J., Inzé, D., Nelissen, H. and Saibo, N.J.M. (2019) Source–Sink Regulation in Crops under Water Deficit. Trends in Plant Science 24(7):652-663 [doi:10.1016/j.tplants.2019.04.005]
  • Górska, A.M., Gouveia, P., Borba, A.R., Zimmermann, A., Serra, T.S., Lourenço, T.F., Margarida Oliveira, M., Peterhänsel, C. and Saibo, N.J.M. (2019) ZmbHLH 80 and ZmbHLH 90 transcription factors act antagonistically and contribute to regulate PEPC 1 cell‐specific gene expression in maize. Plant Journal 99(2):270-285 [doi:10.1111/tpj.14323]
  • Rosa MTG, Almeida DM, Pires IS, Farias DR, Martins AG, Maia LC, Costa de Oliveira A, Saibo NJM, Oliveira MM, Abreu IA (2018) Insights into the transcriptional and post-transcriptional regulation of the rice SUMOylation machinery and into the role of two rice SUMO proteases. BMC Plant Biology 18:349 [doi:10.1186/s12870-018-1547-3]
  • Chander, S., Almeida, D.M., Serra, T.S., Jardim-Messeder, D., Barros, P.M., Lourenço, T.F., Figueiredo, D.D., Margis-Pinheiro, M., Costa, J.M., Oliveira, M.M. and Saibo, N.J.M. (2018) OsICE1 transcription factor improves photosynthetic performance and reduces grain losses in rice plants subjected to drought. Environmental and Experimental Botany 150:88-98 [10.1016/j.envexpbot.2018.02.004]
  • Ramos AM, Usié A, Barbosa P, Barros PM, Capote T, Chaves I, Simões F, Abreu IA, Carrasquinho I, Faro C, Guimarães JB, Mendonça D, Nóbrega F, Rodrigues L, Saibo NJM, Varela MC, Egas C, Matos J, Miguel CM, Oliveira MM, Ricardo CP, Gonçalves S (2018) The draft genome sequence of cork oak. Scientific Data May 22;5:180069 [doi:10.1038/sdata.2018.69]
  • Borba AR, Serra TS, Górska A, Gouveia P, Cordeiro AM, Reyna-Llorens I, Kneřová J, Barros PM, Abreu IA, Oliveira MM, Hibberd JM, Saibo NJM (2018) Synergistic binding of bHLH transcription factors to the promoter of the maize NADP-ME gene used in C4 photosynthesis is based on an ancient code found in the ancestral C3 state. Molecular Biology and Evolution 35(7):1690-1705 [doi:10.1093/molbev/msy060]
  • Almadanim MC, Gonçalves NM, Rosa MTG, Alexandre BM, Cordeiro AM, Rodrigues M, Saibo NJM, Soares CM, Romão CV, Oliveira MM, Abreu IA (2018) The rice cold-responsive calcium-dependent protein kinase OsCPK17 is regulated by alternative splicing and post-translational modifications. Biochim Biophys Acta 1865(2):231-246 [doi:10.1016/j.bbamcr.2017.10.010]
  • Jardim-Messeder, D., Caverzan, A., Rauber, R., Cunha, J.R., Carvalho, F.E.L., Gaeta, M.L., da Fonseca, G.C., Costa, J.M., Frei, M., Silveira, J.A.G., Margis, R., Saibo, N.J.M., Margis-Pinheiro, M. (2018) Thylakoidal APX modulates hydrogen peroxide content and stomatal closure in rice (Oryza sativa L.). Environmental and Experimental Botany 150:46-56 [doi:10.1016/j.envexpbot.2018.02.012]
  • Almeida, D.M., Gregorio, G.B., Oliveira, M.M. and Saibo, N.J.M. (2017) Five novel transcription factors as potential regulators of OsNHX1 gene expression in a salt tolerant rice genotype. Plant Mol Biol 93, 61–77 [doi:10.1007/s11103-016-0547-7]
  • Almeida, D.M., Oliveira, M.M. and Saibo, N.J.M. (2017) Regulation of Na+ and K+ homeostasis in plants: towards improved salt stress tolerance in crop plants. Genetics and Molecular Biology 40(1):326-345 [doi:10.1590/1678-4685-gmb-2016-0106]
  • Barros, P.M., Cherian, S., Costa, M., Sapera, H, Saibo, N.J.M. and Oliveira, M.M. (2017) The identification of almond GIGANTEA gene and its expression under cold stress, variable photoperiod, and seasonal dormancy. Biologia Plantarum 61, 631–640 [doi:10.1007/s10535-017-0711-1]
  • Cordeiro, A.M., Figueiredo, D.D., Tepperman, J., Borba, A.R., Lourenço, T., Abreu, I.A., Ouwerkerk, P.B.F., Quail, P.H., Margarida Oliveira, M. and Saibo, N.J.M. (2016) Rice phytochrome-interacting factor protein OsPIF14 represses OsDREB1B gene expression through an extended N-box and interacts preferentially with the active form of phytochrome B. Biochim Biophys Acta 1859(2):393-404 [doi: 10.1016/j.bbagrm.2015.12.008]
  • T. F. Lourenço, T. S. Serra, A. M. Cordeiro, S. J. Swanson, S. Gilroy, N. J. M. Saibo & M. M. Oliveira (2016) Rice root curling, a response to mechanosensing, is modulated by the rice E3-ubiquitin ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 (OsHOS1). Plant Signaling & Behavior 11:8 [doi:10.1080/15592324.2016.1208880]
  • Lourenço, T.F., Serra, T.S., Cordeiro, A.M., Swanson, S.J., Gilroy, S., Saibo, N.J.M*., and Oliveira, M.M.* (2015) The rice E3 ubiquitin ligase OsHOS1 modulates the expression of OsRMC, a gene involved in root mechano-sensing, through the interaction with two ERF transcription factors. Plant Physiology pp.01131.2015 [doi:10.1104/pp.15.01131] (both corresponding authors)
  • Fonseca, C., Planchon, S., Serra, T., Chander, S., Saibo, N. J. M., Renaut, J., Oliveira, M.M., Batista, R. (2015) In vitro culture may be the major contributing factor for transgenic versus non-transgenic proteomic plant differences. PROTEOMICS 15: 124-134 [doi:10.1002/pmic.201400018]
  • Pereira Leal, JB et al (2014) A comprehensive assessment of the transcriptome of cork oak (Quercus suber) through EST sequencing. BMC Genomics 15, 371 [doi:10.1186/1471-2164-15-371]

  • Abreu I, Farinha AP, Negrão S, Gonçalves N, Fonseca C, Rodrigues M, Batista R, Saibo NJM, Oliveira, MM (2013) Coping with abiotic stress: Proteome changes for crop improvement. Journal of Proteomics 93: 145-168 [doi:10.1016/j.jprot.2013.07.014]

  • Lourenço T, Sapeta H, Figueiredo D, Rodrigues M, Cordeiro A, Abreu IA, Saibo NJM, Oliveira MM (2013) Isolation and characterization of rice (Oryza sativa L.) E3-ubiquitin ligase OsHOS1 gene in the modulation of cold stress response. Plant Molecular Biology  83(4-5): p. 351-363 [doi:10.1007/s11103-013-0092-6]

  • Serra, TS, Figueiredo, DD, Cordeiro, AM, Almeida, DM, Lourenço, T, Abreu, IA, Sebastián, A, Fernandes, L, Contreras-Moreira, B, Oliveira, MM, Saibo, NJM (2013) OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors. Plant Molecular Biology 82:439-455 [doi:10.1007/s11103-013-0073-9]

  • Barros PM, Gonçalves N, Saibo NJM, Oliveira MM (2012) Functional characterization of two C-repeat binding factors involved in cold acclimation in almond. Tree Physiology 32(9): 1113-1128 [doi: 10.1093/treephys/TPS067]

  • Barros PM, Gonçalves N, Saibo N.J.M., Oliveira MM (2012) Cold acclimation and floral development in almonds budbreak: insights into the regulatory pathways. Journal of Experimental Botany 63(12): 4585-96 [doi:10.1093/jxb/ers144]

  • Figueiredo, D. D., Barros, P. M., Cordeiro, A. M., Serra, T., Lourenço, T., Chander, S., Oliveira, M. M., Saibo, N. J. M.  (2012) Seven Zinc Finger transcription factors are novel regulators of the stress responsive gene OsDREB1B. Journal of Experimental Botany 63(10):3643-56 [doi:10.1093/jxb/ers035]

  • Santos, A.P., Serra, T., Figueiredo, D., Barros, P., Lourenço, T., Chander, S., Oliveira, M.M., Saibo, N.J.M. (2011) Transcription regulation of abiotic stress responses in rice: a combined action of transcription factors and epigenetic mechanisms. OMICS: A Journal of Integrative Biology 15 (12): 839 [doi:10.1089/omi.2011.0095]

  • Lourenço, T., Saibo, N.J.M., Batista, R., Oliveira, M.M. (2011) Inducible and constitutive expression of HvCBF4 in rice leads to differential gene expression and drought tolerance. Biologia Plantarum 55: 663-673 [doi:10.1007/s10535-011-0164-x]

  • Negrão, S., Courtois, B., Ahmadi N., Abreu I., Saibo N. and Oliveira, M.M. (2011) Recent updates on salinity stress in rice: from physiological to molecular responses. Critical Reviews in Plant Science 30 (4): 329-377 [doi:10.1080/07352689.2011.587725]

  • Chaves, M, Costa, M., Saibo, N.J.M (2011) Recent advances in photosynthesis under drought and salinity. Advances in Botanical Research  57, 49 – 104 [doi:10.1016/B978-0-12-387692-8.00003-5]

  • Saibo, N.J.M., Lourenço, T. and Oliveira, M.M. (2009) Transcription factors and regulation of photosynthetic and related metabolism under environmental stresses. Annals of Botany 103: 609-623 [doi:10.1093/aob/mcn227]

  • Kodad O, Sanchez A, Saibo N, Oliveira MM, Socias I Company R. (2008) Identification and characterization of new S alleles associated with self-incompatibility in almond. Plant Breeding 127(6): 632-638 [doi:10.1111/j.1439-0523.2008.01541.x]

  • Batista R, Saibo N, Lourenço T, Oliveira MM. (2008) Microarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion. Proceedings of the National Academy of Sciences of the United States of America 105(9): 3640–3645 [doi:10.1073/pnas.0707881105]

  • Saibo, N.J.M., Vriezen, W., De Grauwe, L., Azmi, A., Prinsen, E. and Van Der Straeten, D. (2007) A comparative analysis of the Arabidopsis mutant amp1-1 and a novel weak amp1 allele reveals new functions of the AMP1 protein. Planta 225: 831-842 [doi:10.1007/s00425-006-0395-9]

  • O. Kodad, A. Sánchez, N. Saibo, J. M. Alonso, M. M. Oliveira and R. Socias i Company (2006) Cloning and sequencing of partial genomic DNA fragments corresponding to the S11 and S12 alleles of the Spanish almond cultivar ‘Marcona’. Spanish Journal of Agricultural Research 4: 331-335

  • L. Chaerle*, N.J.M. Saibo* and D. Van Der Straeten (2005) Tuning the pores: towards engineering plants for improved water use efficiency. Trends in Biotechnology 23: 308-315.[doi:10.1016/j.tibtech.2005.04.005] (*the first two authors contributed equally to this work)

  • Saibo, N.J.M., Van Der Straeten, D. and Rodrigues-Pousada, C. (2004) Lupinus albus gamma-tubulin: mRNA and protein accumulation during development and in response to darkness. Planta 219: 201-211 [doi:10.1007/s00425-004-1218-5]

  • Saibo, N.J.M., Vriezen, W., Beemster, G. and Van Der Straeten., D. (2003) Growth and stomata development of Arabidopsis hypocotyls is controlled by gibberellins and modulated by ethylene and auxins. The Plant Journal 33(6): 989-1000 [doi:10.1046/j.1365-313X.2003.01684.x]

  • Vandenbussche, F., Smalle, J., Le, J., Saibo, N.J.M., De Paepe, A., Chaerle, L., Tietz, O., Smets, R., Laarhoven, L.J.J., Harren, F.J.M., Van Onckelen, H., Palme, K., Verbelen, J-P., and Van Der Straeten, D. (2003) The Arabidopsis mutant alh1 illustrates a cross talk between ethylene and auxin. Plant Physiology 131(3): 1228-38 [doi:10.1104/pp.010850]

  • Werbrouck, S.P.O., Saibo, N.J.M. Dhuyvetter, H. De Schepper, S., Van Der Straeten,D., Debergh, P.C. (2003) Physiological and morphological evidence of brassinosteroid-biosynthesis inhibition by the fungicide imazalil. Physiologia Plantarum 119: 69-77 [doi:10.1034/j.1399-3054.2003.00155.x]

  • Bekman, E., Saibo, N., Di Cataldo, A., Regalado, A., Ricardo, C.P. and Rodrigues-Pousada, C. (2000) Differencial expression of four genes encoding 1-aminocyclopropane-1-carboxylate synthase in Lupinus albus during germination, and in response to indole-3-acetic acid and wounding. Planta 211: 663-672

 

Contribution to books

  • Lourenço T, Barros PM, Saibo NJM, Abreu IA, Santos AP, António C, Pereira JS, Oliveira MM (2016) Genomics of Drought. In: Plant Genomics and Climate Change, Springer Science. Chapter 5, pp 85-135
  • Almeida DM*, Almadanim MC*, Lourenço T, Abreu IA, Saibo NJM, Oliveira MM (2016) Screening for abiotic stress tolerance in rice: salt, cold and drought. In: Duque P (ed). Environmental Responses in Plants, Springer, New York, NY, USA. Volume 1398 of the series Methods in Molecular Biology, pp 155-18 [doi: 10.1007/978-1-4939-3356-3_14] (*both authors contributed equally to this manuscript) 
  • Oliveira MM, Matos JA, Saibo N.J.M., Gil L (Eds.) (2012) “Present and Future of Cork Oak in Portugal” Published by SPFV, Lisbon
  • Saibo, N.J.M, Vriezen, W., and Van Der Straeten., D. (2003) Stomata Formation in the Hypocotyl of Arabidopsis is Gibberellin-Dependent and is Modulated by Ethylene and Auxin. In: Biology and Biotechnology of the Plant Hormone Ethylene III (M. Vendrell, H. Klee, J.C.Pech and F.Romojaro, eds) Amsterdam: IOS Press, pp. 301-302
  • Vriezen, W., Saibo, N., and Van Der Straeten., D. (2003) Interactions between ethylene and auxins with gibberellins in the control of hypocotyl growth in Arabidopsis. In: Biology and Biotechnology of the Plant Hormone Ethylene III (M. Vendrell, H. Klee, J.C. Pech and F. Romojaro, eds) Amsterdam: IOS Press, pp. 271-277

 

Papers in conference proceedings

  • Barros P, Saibo N, Martins M, Ma R-C, Oliveira MM (2010) Identification of candidate genes involved in the response to biotic and abiotic stress in almond. Options Méditerranéennes, Series A no. 94: pp 87-94. XIV GREMPA Meeting on Pistachios and Almonds
  • Santos A.M., Oliver M.J., Sanchez A.M., Payton P., Saibo N., Oliveira M.M. (2007) Almond shoot regeneration in Prunus dulcis – a molecular approach to the regeneration process. Acta Horticulturae, 738: 663-668, ISHS, Belgium
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