Semchonok Lab - Cryo-EM Integrative Structural Biology Laboratory

Research Interests and Focus 1. Photosynthetic Processes. My primary research interest is centered around the study of photosynthetic organisms. In response to the global food crisis, research on various photosynthetic organisms has intensified worldwide, aiming to unravel the principles and limits of photosynthesis. By leveraging my expertise as a cryo-EM specialist, I aim to elucidate the central processes in photosynthetic organisms through high-resolution structural characterization using cryo-EM. This includes multisubunit (pigment)-protein complexes, including membrane-associated ones and supercomplexes of metabolic pathways (metabolones), allowing us to decipher stoichiometries, subunit proximity, interfaces, and the localization of reaction centers and antennae. 2. Cellular Transport Mechanisms. My secondary research interest delves into the intricate structures of COPI and COPII vesicles, along with the dynamics of key proteins such as Arf1, governing intracellular vesicular trafficking and membrane dynamics. As a cryo-EM specialist, I aim to decode the mechanisms underlying cellular transport, focusing on processes like (dis)-assembly of COPI and COPII vesicles.

Dmitry.jpeg

Team members

Dmitry A. Semchonok, , PhD ORCID

Collaborations

 

Publications

Recent Publications  

Cryo-EM structure of a plant photosystem II supercomplex with light-harvesting protein Lhcb8 and α-tocopherol

M. Opatíková, D. A. Semchonok, D. Kopečný, P. Ilík, P. Pospíšil, I. Ilíková, P. Roudnický, S. Ć. Zeljković, P. Tarkowski, F. L. Kyrilis, F. Hamdi, P. L. Kastritis, R. Kouřil, Nat. Plants 9, 1359–1369 

2023

Solubilization, purification, and characterization of the hexameric form of phosphatidylserine synthase from Candida albicans

Y Zhou, JH Syed, DA Semchonok, E Wright, FL Kyrilis, F Hamdi, ...
Journal of Biological Chemistry 299 (6)
2023
Delineating organizational principles of the endogenous LA virus by cryo-EM and computational analysis of native cell extracts
L Schmidt, C Tüting, FL Kyrilis, F Hamdi, DA Semchonok, G Hause, ...
BioRxiv, 2022.07. 15.498668
2022
Cryo-EM structure of the Rhodobaca bogoriensis RC-LH1-PufX dimeric complex at 2.9 Å
DA Semchonok, MI Siponen, C Tüting, Q Charras, FL Kyrilis, F Hamdi, ...
bioRxiv, 2022.02. 25.481955
2022
Cryo-EM structure of a tetrameric photosystem I from Chroococcidiopsis TS-821, a thermophilic, unicellular, non-heterocyst-forming cyanobacterium
DA Semchonok, J Mondal, CJ Cooper, K Schlum, M Li, M Amin, ...
Plant Communications 3 (1)
2022