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2014

ITQB articles published in 2014

Articles indexed in Web of Science Core Collection

  1. Adamova, G., Lopes, J. N. C., Rebelo, L. P. N., Santos, L., Seddon, K. R., & Shimizu, K. (2014). The alternation effect in ionic liquid homologous series. Physical Chemistry Chemical Physics, 16(9), 4033-4038. doi: 10.1039/c3cp54584a
  2. Alarico, S., Costa, M., Sousa, M. S., Maranha, A., Lourenco, E. C., Faria, T. Q., Ventura M.R., Empadinhas, N. (2014). Mycobacterium hassiacum recovers from nitrogen starvation with up-regulation of a novel glucosylglycerate hydrolase and depletion of the accumulated glucosylglycerate. Scientific Reports, 4, 11. doi: 10.1038/srep06766
  3. Almeida, A. M., Plowman, J. E., Harland, D. P., Thomas, A., Kilminster, T., Scanlon, T., Milton, J., Greeff, J.,Oldham, C., Clerens, S. (2014). Influence of feed restriction on the wool proteome: A combined iTRAQ and fiber structural study. Journal of Proteomics, 103, 170-177.doi: 10.1016/j.jprot.2014.03.036
  4. Almeida, H. F. D., Freire, M. G., Fernandes, A. M., Lopes-da-Silva, J. A., Morgado, P., Shimizu, K., Filipe, E.J.M., Lopes, J.N.C., Santos, L.M.N.B.F., Coutinho, J. A. P. (2014). Cation Alkyl Side Chain Length and Symmetry Effects on the Surface Tension of Ionic Liquids. Langmuir, 30(22), 6408-6418. doi: 10.1021/la501308q
  5. Almeida, N. F., Leitao, S. T., Caminero, C., Torres, A. M., Rubiales, D., & Vaz Patto, M.C.(2014). Transferability of molecular markers from major legumes to Lathyrus spp. for their application in mapping and diversity studies. Molecular Biology Reports, 41(1), 269-283.doi: 10.1007/s11033-013-2860-4
  6. Almeida, S. T., Nunes, S., Paulo, A. C. S., Valadares, I., Martins, S., Breia, F., Brito-Avo, A., Morais, A., de Lencastre, H., Sa-Leao, R. (2014). Low Prevalence of Pneumococcal Carriage and High Serotype and Genotype Diversity among Adults over 60 Years of Age Living in Portugal. Plos One, 9(3), 10. doi: 10.1371/journal.pone.0090974
  7. Alminger, M., Aura, A. M., Bohn, T., Dufour, C., El, S. N., Gomes, A., Karakaya, S., Martinez-Cuest, M.C., McDougall, G.J., Requena, T., Santos, C. N. (2014). In Vitro Models for Studying Secondary Plant Metabolite Digestion and Bioaccessibility. Comprehensive Reviews in Food Science and Food Safety, 13(4), 413-436. doi: 10.1111/1541-4337.12081
  8. Alvarez, M. S., Moscoso, F., Rodriguez, A., Sanroman, M. A., & Deive, F. J. (2014). Hybrid sequential treatment of aromatic hydrocarbon-polluted effluents using non-ionic surfactants as solubilizers and extractants. Bioresource Technology, 162, 259-265. doi: 10.1016/j.biortech.2014.03.158
  9. Araujo, J. M. M., Florindo, C., Pereiro, A. B., Vieira, N. S. M., Matias, A. A., Duarte, C. M. M.,Rebelo, L.P.N.,Marrucho, I. M. (2014). Cholinium-based ionic liquids with pharmaceutically active anions. Rsc Advances, 4(53), 28126-28132. doi: 10.1039/c3ra47615d
  10. Assefa, N. G., Niiranen, L., Johnson, K. A., Leiros, H. K. S., Smalas, A. O., Willassen, N. P., & Moe, E. (2014). Structural and biophysical analysis of interactions between cod and human uracil-DNA N-glycosylase (UNG) and UNG inhibitor (Ugi). Acta Crystallographica Section D-Biological Crystallography, 70, 2093-2100. doi: 10.1107/s1399004714011699
  11. Bajanca-Lavado, M. P., Simoes, A. S., Betencourt, C. R., Sa-Leao, R., & Portuguese Grp Study, H. (2014). Characteristics of Haemophilus influenzae invasive isolates from Portugal following routine childhood vaccination against H. influenzae serotype b (2002-2010). European Journal of Clinical Microbiology & Infectious Diseases, 33(4), 603-610.doi: 10.1007/s10096-013-1994-6
  12. Barroso-Batista, J., Sousa, A., Lourenco, M., Bergman, M. L., Sobral, D., Demengeot, J., Xavier, KB., Gordo, I. (2014). The First Steps of Adaptation of Escherichia coli to the Gut Are Dominated by Soft Sweeps. Plos Genetics, 10(3), 12.doi: 10.1371/journal.pgen.1004182
  13. Batista, A. R., Gianni, D., Ventosa, M., Coelho, A. V., Almeida, M. R., Sena-Esteves, M., & Saraiva, M. J. (2014). Gene therapy approach to FAP: in vivo influence of T119M in TTR deposition in a transgenic V30M mouse model. Gene Therapy, 21(12), 1041-1050. doi: 10.1038/gt.2014.86
  14. Bernardes, C. E. S., Shimizu, K., Ferreira, A., Santos, L., & Lopes, J. N. C. (2014). Structure and Aggregation in the 1,3-Dialkyl-imidazolium Bis(trifluoromethylsulfonyl)imide Ionic Liquid Family: 2. From Single to Double Long Alkyl Side Chains. Journal of Physical Chemistry B, 118(24), 6885-6895. doi: 10.1021/jp502968u
  15. Bessems, J. G., Loizou, G., Krishnan, K., Clewell, H. J., Bernasconi, C., Bois, F.,Coecke, S., Collnot, E.M., Diembeck, W., Farcal, L.R., Geraets, L., Gundert-Remy, U., Kramer, N., Kusters, G., Leite, S.B., Pelkonen, O.R., Schroder, K., Testai, E., Wilk-Zasadna, I Zaldivar-Comenges, J. M. (2014). PBTK modelling platforms and parameter estimation tools to enable animal-free risk assessment Recommendations from a joint EPAA - EURL ECVAM ADME workshop. Regulatory Toxicology and Pharmacology, 68(1), 119-139. doi: 10.1016/j.yrtph.2013.11.008
  16. Besson, C. K., Lobo-do-Vale, R., Rodrigues, M. L., Almeida, P., Herd, A., Grant, O. M., David, T.S.,Schmidt, M., Otieno, D., Keenan, T.F ., Gouveia, C., Meriaux, C., Chaves, MM., Pereira, J. S. (2014). Cork oak physiological responses to manipulated water availability in a Mediterranean woodland. Agricultural and Forest Meteorology, 184, 230-242.doi: 10.1016/j.agrformet.2013.10.004
  17. Bird, L. J., Saraiva, I. H., Park, S., Calcada, E. O., Salgueiro, C. A., Nitschke, W., Louro, R.O., Newman, D. K. (2014). Nonredundant Roles for Cytochrome c(2) and Two High-Potential Iron-Sulfur Proteins in the Photoferrotroph Rhodopseudomonas palustris TIE-1. Journal of Bacteriology, 196(4), 850-858. doi: 10.1128/jb.00843-13
  18. Borges, A. F., Fonseca, C., Ferreira, R. B., Lourenco, A. M., & Monteiro, S. (2014). Reference Gene Validation for Quantitative RT-PCR during Biotic and Abiotic Stresses in Vitis vinifera. Plos One, 9(10), 9. doi: 10.1371/journal.pone.0111399
  19. Borges, N., Jorge, C. D., Goncalves, L. G., Goncalves, S., Matias, P. M., & Santos, H. (2014). Mannosylglycerate: structural analysis of biosynthesis and evolutionary history. Extremophiles, 18(5), 835-852. doi: 10.1007/s00792-014-0661-x
  20. Borges, P. T., Frazao, C., Miranda, C. S., Carrondo, M. A., & Romao, C. V. (2014). Structure of the monofunctional heme catalase DR1998 from Deinococcus radiodurans. Febs Journal, 281(18), 4138-4150. doi: 10.1111/febs.12895
  21. Borges, P. T., Miranda, C. S., Santos, S. P., Carita, J. N., Frazao, C., & Romao, C. V. (2014). Purification, crystallization and phase determination of the DR1998 haem b catalase from Deinococcus radiodurans. Acta Crystallographica Section F-Structural Biology Communications, 70, 659-662. doi: 10.1107/s2053230x1400764x
  22. Braga, S. S., Mokal, V., Paz, F. A. A., Pillinger, M., Branco, A. F., Sardao, V. A., Diogo, C.V.,Oliveira, P.J., Marques, M.P.M .,Romao, C.C.,Goncalves, I. S. (2014). Synthesis,Characterisation and Antiproliferative Studies of Allyl(dicarbonyl)(cyclopentadienyl)molybdenum Complexes and Cyclodextrin Inclusion Compounds. European Journal of Inorganic Chemistry(29), 5034-5045. doi: 10.1002/ejic.201402540
  23. Brisse, S., Brehony, C., Conceicao, T., Cubero, M., Glasner, C., Le Gouil, M., Renvoise, A., Sheppard, S., Weinert, L. A. (2014). Microbial molecular markers and epidemiological surveillance in the era of high throughput sequencing: an update from the IMMEM-10 conference. Research in Microbiology, 165(2), 140-153. doi: 10.1016/j.resmic.2014.01.003
  24. Brissos, V., Goncalves, N., Melo, E. P., & Martins, L. O. (2014). Improving Kinetic or Thermodynamic Stability of an Azoreductase by Directed Evolution. Plos One, 9(1), 12. doi: 10.1371/journal.pone.0087209
  25. Brito, J. A., Gutierres, A., Denkmann, K., Dahl, C., & Archer, M. (2014). Production, crystallization and preliminary crystallographic analysis of Allochromatium vinosum thiosulfate dehydrogenase TsdA, an unusual acidophilic c-type cytochrome. Acta Crystallographica Section F-Structural Biology Communications, 70, 1424-1427.doi: 10.1107/s2053230x14019384
  26. Bruno, S. M., Gomes, A. C., Gamelas, C. A., Abrantes, M., Oliveira, M. C., Valente, A. A.,Paz, FAA., Pillinger, M., Romao, C.C., Goncalves, I. S. (2014). Application of an indenyl molybdenum dicarbonyl complex in the isomerisation of alpha-pinene oxide to campholenic aldehyde. New Journal of Chemistry, 38(7), 3172-3180. doi: 10.1039/c4nj00371c
  27. Cabrita, P., Trigo, M. J., Ferreira, R. B., & Brito, L. (2014). Is the Exoproteome Important for Bacterial Pathogenesis? Lessons Learned from Interstrain Exoprotein Diversity in Listeria monocytogenes Grown at Different Temperatures. Omics-a Journal of Integrative Biology, 18(9), 553-569. doi: 10.1089/omi.2013.0151
  28. Canales, J., Bautista, R., Label, P., Gomez-Maldonado, J., Lesur, I., Fernandez-Pozo, N.,Rueda-Lopez, M., Guerrero-Fernandez, D., Castro-Rodriguez, V., Benzekri, H., Canas, R.A., Guevara, MA., Rodrigues, A ., Seoane, P., Teyssier, C ., Morel, A ., Ehrenmann, F., Le Provost, G., Lalanne, C., Noirot, C ., Klopp, C., Reymond, I., Garcia-Gutierrez, A., Trontin, J.F., Lelu-Walter, M.A., Miguel, C., Cervera, M.T., Canton, F.R.,Plomion, C., Harvengt, L., Avila, C., Gonzalo Claros, M.,Canovas, F. M. (2014). De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology. Plant Biotechnology Journal, 12(3), 286-299. doi: 10.1111/pbi.12136
  29. Cardoso, J. M. S., Fernandes, A., Cardoso, B. D., Carvalho, M. D., Ferreira, L. P., Calhorda, M. J., & Royo, B. (2014). Cationic Half-Sandwich Iron(II) and Iron(III) Complexes with N-Heterocyclic Carbene Ligands. Organometallics, 33(20), 5670-5677.     doi: 10.1021/om500528p
  30. Carilho, R., de Carvalho, M., Swash, M., Pinto, S., Pinto, A., & Costa, J. (2014). VASCULAR ENDOTHELIAL GROWTH FACTOR AND AMYOTROPHIC LATERAL SCLEROSIS: THE INTERPLAY WITH EXERCISE AND NONINVASIVE VENTILATION. Muscle & Nerve, 49(4), 545-550.doi: 10.1002/mus.23955
  31. Carvalho, P. J., Ventura, S. P. M., Batista, M. L. S., Schroder, B., Goncalves, F., Esperanca, J.M.S.S., Mutelet, F., Coutinho, J. A. P. (2014). Understanding the impact of the central atom on the ionic liquid behavior: Phosphonium vs ammonium cations. Journal of Chemical Physics, 140(6), 12. doi: 10.1063/1.4864182
  32. Castanheira, N., Dourado, A. C., Alves, P. I., Cortes-Pallero, A. M., Delgado-Rodriguez, A. I., Prazeres, A.,Borges, N., Sanchez, C., Crespo, MTB.,  Fareleira, P. (2014). Annual ryegrass-associated bacteria with potential for plant growth promotion. Microbiological Research, 169(9-10), 768-779. doi: 10.1016/j.micres.2013.12.010
  33. Catalao, M. J., Figueiredo, J., Henriques, M. X., Gomes, J. P., & Filipe, S. R. (2014). Optimization of Fluorescent Tools for Cell Biology Studies in Gram-Positive Bacteria. Plos One, 9(12), 21. doi: 10.1371/journal.pone.0113796
  34. Chaves, I., Lin, Y. C., Pinto-Ricardo, C., Van de Peer, Y., & Miguel, C. (2014). miRNA profiling in leaf and cork tissues of Quercus suber reveals novel miRNAs and tissue-specific expression patterns. Tree Genetics & Genomes, 10(3), 721-737.doi: 10.1007/s11295-014-0717-1
  35. Cmoch, A., Podszywalow-Bartnicka, P., Palczewska, M., Piwocka, K., Groves, P., & Pikula, S. (2014). Stimulators of Mineralization Limit the Invasive Phenotype of Human Osteosarcoma Cells by a Mechanism Involving Impaired Invadopodia Formation. Plos One, 9(10), 13. doi: 10.1371/journal.pone.0109938
  36. Coelho, D. S., Gaspar, C. J., & Domingos, P. M. (2014). Ire1 Mediated mRNA Splicing in a C-Terminus Deletion Mutant of Drosophila Xbp1. Plos One, 9(8), 6. doi: 10.1371/journal.pone.0105588
  37. Cole, C., Coelho, A. V., James, R. H., Connelly, D., & Sheehan, D. (2014). Proteomic responses to metal-induced oxidative stress in hydrothermal vent-living mussels, Bathymodiolus sp., on the Southwest Indian Ridge. Marine Environmental Research, 96, 29-37. doi: 10.1016/j.marenvres.2013.09.003
  38. Conceicao, T., Coelho, C., Santos-Silva, I., de Lencastre, H., & Aires-de-Sousa, M. (2014). Epidemiology of Methicillin-Resistant and -Susceptible Staphylococcus aureus in Luanda, Angola: First Description of the Spread of the MRSA ST5-IVa Clone in the African Continent. Microbial Drug Resistance, 20(5), 441-449. doi: 10.1089/mdr.2014.0007
  39. Conceicao, T., Silva, I. S., de Lencastre, H., & Aires-de-Sousa, M. (2014). Staphylococcus aureus Nasal Carriage Among Patients and Health Care Workers in Sao Tome and Principe. Microbial Drug Resistance, 20(1), 57-66. doi: 10.1089/mdr.2013.0136
  40. Cordeiro, M. A., Moriuchi, K. S., Fotinos, T. D., Miller, K. E., Nuzhdin, S. V., von Wettberg, E. J., & Cook, D. R. (2014). POPULATION DIFFERENTIATION FOR GERMINATION AND EARLY SEEDLING ROOT GROWTH TRAITS UNDER SALINE CONDITIONS IN THE ANNUAL LEGUME MEDICAGO TRUNCATULA (FABACEAE). American Journal of Botany, 101(3), 488-498. doi: 10.3732/ajb.1300285
  41. Correia, B., Pinto-Marijuan, M., Castro, B. B., Brossa, R., Lopez-Carbonell, M., & Pinto, G. (2014). Hormonal dynamics during recovery from drought in two Eucalyptus globulus genotypes: From root to leaf. Plant Physiology and Biochemistry, 82, 151-160. doi: 10.1016/j.plaphy.2014.05.016
  42. Correia, B., Pinto-Marijuan, M., Neves, L., Brossa, R., Dias, M. C., Costa, A., Castro, B.B.,Araujo, C., Santos, C.,Chaves, M.M., Pinto, G. (2014). Water stress and recovery in the performance of two Eucalyptus globulus clones: physiological and biochemical profiles. Physiologia Plantarum, 150(4), 580-592. doi: 10.1111/ppl.12110
  43. Correia, B. E., Bates, J. T., Loomis, R. J., Baneyx, G., Carrico, C., Jardine, J. G., Rupert, P., Correnti, C., Kalyuzhniy, O., Vittal, V., Connell, MJ., Stevens, E., Schroeter, A., Chen, M ., MacPherson, S., Serra, A.M ., Adachi, Y ., Holmes, M.A ., Li, Y.X ., Klevit, R.E ., Graham, B.S ., Wyatt, R.T., Baker, D.,Strong, R.K .,Crowe, J.E., Johnson, P.R., Schief, W. R. (2014). Proof of principle for epitope-focused vaccine design. Nature, 507(7491), 201-+. doi: 10.1038/nature12966
  44. Correia, C., Serra, M., Espinha, N., Sousa, M., Brito, C., Burkert, K., Zheng, Y.J., Hescheler, J., Carrondo, M.J.T., Saric, T., Alves, P. M. (2014). Combining Hypoxia and Bioreactor Hydrodynamics Boosts Induced Pluripotent Stem Cell Differentiation Towards Cardiomyocytes. Stem Cell Reviews and Reports, 10(6), 786-801. doi: 10.1007/s12015-014-9533-0
  45. Correia, I. L., Franco, I. S., & de Sa-Nogueira, I. (2014). Towards Novel Amino Acid-Base Contacts in Gene Regulatory Proteins: AraR - A Case Study. Plos One, 9(11), 11. doi: 10.1371/journal.pone.0111802
  46. Corte, L., Valente, F., Serrano, M., Gomes, C. M., Moran, C. P., & Henriques, A. O. (2014). A Conserved Cysteine Residue of Bacillus subtilis SpoIIIJ Is Important for Endospore Development. Plos One, 9(8), 11. doi: 10.1371/journal.pone.0099811
  47. Costa, R. S., Hartmann, A., Gaspar, P., Neves, A. R., & Vinga, S. (2014). An extended dynamic model of Lactococcus lactis metabolism for mannitol and 2,3-butanediol production. Molecular Biosystems, 10(3), 628-639. doi: 10.1039/c3mb70265k
  48. Crawshaw, A. D., Serrano, M., Stanley, W. A., Henriques, A. O., & Salgado, P. S. (2014). A mother cell-to-forespore channel: current understanding and future challenges. Fems Microbiology Letters, 358(2), 129-136. doi: 10.1111/1574-6968.12554
  49. Croucher, N. J., Chewapreecha, C., Hanage, W. P., Harris, S. R., McGee, L., van der Linden, M.,Song, JH., Ko, KS., de Lencastre, H., Turner, C., Yang, F., Sa-Leao, R., Beall, B., Klugman, K.P., Parkhill, J., Turner, P., Bentley, S. D. (2014). Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine Escape. Genome Biology and Evolution, 6(7), 1589-1602. doi: 10.1093/gbe/evu120
  50. Croucher, N. J., Hanage, W. P., Harris, S. R., McGee, L., van der Linden, M., de Lencastre, H., Sa-Leao, R., Song, J.H.,Ko, K.S., Beall, B., Klugman, K.P., Parkhill, J., Tomasz, A., Kristinsson, K.G; Bentley, S. D. (2014). Variable recombination dynamics during the emergence, transmission and 'disarming' of a multidrug-resistant pneumococcal clone. Bmc Biology, 12, 15.doi: 10.1186/1741-7007-12-49
  51. da Costa-Nunes, J. A., Capitao, C., Kozak, J., Costa-Nunes, P., Ducasa, G. M., Pontes, O., & Angelis, K. J. (2014). The AtRAD21.1 and AtRAD21.3 Arabidopsis cohesins play a synergistic role in somatic DNA double strand break damage repair. Bmc Plant Biology, 14, 14. doi: 10.1186/s12870-014-0353-9
  52. da Cunha, M., Milho, C., Almeida, F., Pais, S. V., Borges, V., Mauricio, R.,Borrego, MJ., Gomes, J.P., Mota, L. J. (2014). Identification of type III secretion substrates of Chlamydia trachomatis using Yersinia enterocolitica as a heterologous system. Bmc Microbiology, 14, 14. doi: 10.1186/1471-2180-14-40
  53. Damas, J. M., Baptista, A. M., & Soares, C. M. (2014). The Pathway for O-2 Diffusion inside CotA Laccase and Possible Implications on the Multicopper Oxidases Family. Journal of Chemical Theory and Computation, 10(8), 3525-3531. doi: 10.1021/ct500196e
  54. Dantas, J. M., Morgado, L., Catarino, T., Kokhan, O., Pokkuluri, P. R., & Salgueiro, C. A. (2014). Evidence for interaction between the triheme cytochrome PpcA from Geobacter sulfurreducens and anthrahydroquinone-2,6-disulfonate, an analog of the redox active components of humic substances. Biochimica Et Biophysica Acta-Bioenergetics, 1837(6), 750-760.doi: 10.1016/j.bbabio.2014.02.004
  55. de Barros, D. P. C., Campos, S. R. R., Madeira, P. P., Azevedo, A. M., Baptista, A. M., & Aires-Barros, M. R. (2014). Modeling the partitioning of amino acids in aqueous two phase systems. Journal of Chromatography A, 1329, 52-60.doi: 10.1016/j.chroma.2013.12.015
  56. de Carvalho, R. C., da Silva, A. B., Soares, R., Almeida, A. M., Coelho, A. V., da Silva, J. M., & Branquinho, C. (2014). Differential proteomics of dehydration and rehydration in bryophytes: evidence towards a common desiccation tolerance mechanism. Plant Cell and Environment, 37(7), 1499-1515. doi: 10.1111/pce.12266
  57. de Sa, M., Ferreira, J. P., Queiroz, V. T., Vilas-Boas, L., Silva, M. C., Almeida, M. H., Guerra-Guimaraes, L., Bronze, M. R. (2014). A liquid chromatography/electrospray ionisation tandem mass spectrometry method for the simultaneous quantification of salicylic, jasmonic and abscisic acids in Coffea arabica leaves. Journal of the Science of Food and Agriculture, 94(3), 529-536. doi: 10.1002/jsfa.6288
  58. del Amo, E., Brotons, P., Monsonis, M., Trivino, M., Inigo, M., Selva, L., Sa-Leao, R., Munoz-Almagro, C. (2014). High invasiveness of pneumococcal serotypes included in the new generation of conjugate vaccines. Clinical Microbiology and Infection, 20(7), 684-689. doi: 10.1111/1469-0691.12422
  59. Domingues, L., Holden, D. W., & Mota, L. J. (2014). The Salmonella Effector SteA Contributes to the Control of Membrane Dynamics of Salmonella-Containing Vacuoles. Infection and Immunity, 82(7), 2923-2934.doi: 10.1128/iai.01385-13
  60. Dordel, J., Kim, C., Chung, M., de la Gandara, M. P., Holden, M. T. J., Parkhill, J., de Lencastre, H., Bentley, S.D., Tomasz, A. (2014). Novel Determinants of Antibiotic Resistance: Identification of Mutated Loci in Highly Methicillin-Resistant Subpopulations of Methicillin-Resistant Staphylococcus aureus. Mbio, 5(2), 9. doi: 10.1128/mBio.01000-13
  61. Duarte, A. G., Cordas, C. M., Moura, J. J. G., & Moura, I. (2014). Steady-state kinetics with nitric oxide reductase (NOR): New considerations on substrate inhibition profile and catalytic mechanism. Biochimica Et Biophysica Acta-Bioenergetics, 1837(3), 375-384. doi: 10.1016/j.bbabio.2014.01.001
  62. Duarte, T. M., Carinhas, N., Barreiro, L. C., Carrondo, M. J. T., Alves, P. M., & Teixeira, A. P. (2014). Metabolic Responses of CHO Cells to Limitation of Key Amino Acids. Biotechnology and Bioengineering, 111(10), 2095-2106. doi: 10.1002/bit.25266
  63. Esteves, A. M., Chandrayan, S. K., McTernan, P. M., Borges, N., Adams, M. W. W., & Santos, H. (2014). Mannosylglycerate and Di-myo-Inositol Phosphate Have Interchangeable Roles during Adaptation of Pyrococcus furiosus to Heat Stress. Applied and Environmental Microbiology, 80(14), 4226-4233. doi: 10.1128/aem.00559-14
  64. Esteves, C. V., Madureira, J., Lima, L. M. P., Mateus, P., Bento, I., & Delgado, R. (2014). Copper(II) and Gallium(III) Complexes of trans-Bis(2-hydroxybenzyl) Cyclen Derivatives: Absence of a Cross-Bridge Proves Surprisingly More Favorable. Inorganic Chemistry, 53(9), 4371-4386. doi: 10.1021/ic403156h
  65. Faria, N. A., Conceicao, T., Miragaia, M., Bartels, M. D., de Lencastre, H., & Westh, H. (2014). Nasal Carriage of Methicillin Resistant Staphylococci. Microbial Drug Resistance, 20(2), 108-117. doi: 10.1089/mdr.2013.0197
  66. Faria, N. T., Santos, M. V., Fernandes, P., Fonseca, L. L., Fonseca, C., & Ferreira, F. C. (2014). Production of glycolipid biosurfactants, mannosylerythritol lipids, from pentoses and D-glucose/D-xylose mixtures by Pseudozyma yeast strains. Process Biochemistry, 49(11), 1790-1799. doi: 10.1016/j.procbio.2014.08.004
  67. Fernandes, F., Dias, M. M., Vidigal, J., Sousa, M. F. Q., Patrone, M., Teixeira, A. P., & Alves, P. M. (2014). Production of rotavirus core-like particles in Sf9 cells using recombinase-mediated cassette exchange. Journal of Biotechnology, 171, 34-38.doi: 10.1016/j.jbiotec.2013.11.020
  68. Fernandes, H. L., Stevenson, I. H., Phillips, A. N., Segraves, M. A., & Kording, K. P. (2014). Saliency and Saccade Encoding in the Frontal Eye Field During Natural Scene Search. Cerebral Cortex, 24(12), 3232-3245. doi: 10.1093/cercor/bht179
  69. Fernandes, H. L., Stevenson, I. H., Vilares, I., & Kording, K. P. (2014). The Generalization of Prior Uncertainty during Reaching. Journal of Neuroscience, 34(34), 11470-11484. doi: 10.1523/jneurosci.3882-13.2014
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  210. Silva, M. A., Valente, R. C., Pokkuluri, P. R., Turner, D. L., Salgueiro, C. A., & Catarino, T. (2014). Thermodynamic and kinetic characterization of two methyl-accepting chemotaxis heme sensors from Geobacter sulfurreducens reveals the structural origin of their functional difference. Biochimica Et Biophysica Acta-Bioenergetics, 1837(6), 920-928. doi: 10.1016/j.bbabio.2014.01.008
  211. Silva, N., Vilela, C., Marrucho, I. M., Freire, C. S. R., Neto, C. P., & Silvestre, A. J. D. (2014). Protein-based materials: from sources to innovative sustainable materials for biomedical applications. Journal of Materials Chemistry B, 2(24), 3715-3740. doi: 10.1039/c4tb00168k
  212. Silva, S. D., Feliciano, R. P., Boas, L. V., & Bronze, M. R. (2014). Application of FTIR-ATR to Moscatel dessert wines for prediction of total phenolic and flavonoid contents and antioxidant capacity. Food Chemistry, 150, 489-493. doi: 10.1016/j.foodchem.2013.11.028
  213. Silvestre, N., Faria, B., & Lopes, J. N. C. (2014). Compressive behavior of CNT-reinforced aluminum composites using molecular dynamics. Composites Science and Technology, 90, 16-24. doi: 10.1016/j.compscitech.2013.09.027
  214. Silvestre, S., Araujo, S. D., Vaz Patto, M.C., & da Silva, J. M. (2014). Performance index: An expeditious tool to screen for improved drought resistance in the Lathyrus genus. Journal of Integrative Plant Biology, 56(7), 610-621. doi: 10.1111/jipb.12186
  215. Sousa, A. C., Oliveira, M. C., Martins, L. O., & Robalo, M. P. (2014). Towards the rational biosynthesis of substituted phenazines and phenoxazinones by laccases. Green Chemistry, 16(9), 4127-4136. doi: 10.1039/c4gc00901k
  216. Strommenger, B., Bartels, M. D., Kurt, K., Layer, F., Rohde, S. M., Boye, K., Westh, H., Witte, W ., De Lencastre, H ., Nubel, U. (2014). Evolution of methicillin-resistant Staphylococcus aureus towards increasing resistance. Journal of Antimicrobial Chemotherapy, 69(3), 616-622. doi: 10.1093/jac/dkt413
  217. Tavares, A., Faria, N. A., de Lencastre, H., & Miragaia, M. (2014). Population structure of methicillin-susceptible Staphylococcus aureus (MSSA) in Portugal over a 19-year period (1992-2011). European Journal of Clinical Microbiology & Infectious Diseases, 33(3), 423-432. doi: 10.1007/s10096-013-1972-z
  218. Tavares, A., Nielsen, J. B., Boye, K., Rohde, S., Paulo, A. C., Westh, H., Schonning, K., de Lencastre, H., Miragaia, M. (2014). Insights into Alpha-Hemolysin (Hla) Evolution and Expression among Staphylococcus aureus Clones with Hospital and Community Origin. Plos One, 9(7), 13. doi: 10.1371/journal.pone.0098634
  219. Tavares, D. A., Simoes, A. S., Bootsma, H. J., Hermans, P. W. M., de Lencastre, H., & Sa-Leao, R. (2014). Non-typeable pneumococci circulating in Portugal are of cps type NCC2 and have genomic features typical of encapsulated isolates. Bmc Genomics, 15, 15. doi: 10.1186/1471-2164-15-863
  220. Tavares, S., Ramos, A. P., Pires, A. S., Azinheira, H. G., Caldeirinha, P., Link, T., Abranches, R.,Silva, MD., Voegele, RT., Loureiro, J., Talhinhas, P. (2014). Genome size analyses of Pucciniales reveal the largest fungal genomes. Frontiers in Plant Science, 5, 11. doi: 10.3389/fpls.2014.00422
  221. Teixeira, R. T., Fortes, A. M., Pinheiro, C., & Pereira, H. (2014). Comparison of good- and bad-quality cork: application of high-throughput sequencing of phellogenic tissue. Journal of Experimental Botany, 65(17), 4887-4905. doi: 10.1093/jxb/eru252
  222. Teixeira, V. H., Vila-Vicosa, D., Baptista, A. M., & Machuqueiro, M. (2014). Protonation of DMPC in a Bilayer Environment Using a Linear Response Approximation. Journal of Chemical Theory and Computation, 10(5), 2176-2184. doi: 10.1021/ct5000082
  223. Tenreiro, S., Reimao-Pinto, M. M., Antas, P., Rino, J., Wawrzycka, D., Macedo, D., Rosado-Ramos, R., Amen, T., Waiss, M., Magalhaes, F., Gomes, A., Santos, CN., Kaganovich, D., Outeiro, T. F. (2014). Phosphorylation Modulates Clearance of Alpha-Synuclein Inclusions in a Yeast Model of Parkinson's Disease. Plos Genetics, 10(5), 23. doi: 10.1371/journal.pgen.1004302
  224. Tome, L. C., Florindo, C., Freire, C. S. R., Rebelo, L. P. N., & Marrucho, I. M. (2014). Playing with ionic liquid mixtures to design engineered CO2 separation membranes. Physical Chemistry Chemical Physics, 16(32), 17172-17182. doi: 10.1039/c4cp01434k
  225. Tome, L. C., Mecerreyes, D., Freire, C. S. R., Rebelo, L. P. N., & Marrucho, I. M. (2014). Polymeric ionic liquid membranes containing IL-Ag+ for ethylene/ethane separation via olefin-facilitated transport. Journal of Materials Chemistry A, 2(16), 5631-5639. doi: 10.1039/c4ta00178h
  226. Tome, L. C., Patinha, D. J. S., Ferreira, R., Garcia, H., Pereira, C. S., Freire, C. S. R., Rebelo, L.P.N., Marrucho, I. M. (2014). Cholinium-based Supported Ionic Liquid Membranes: A Sustainable Route for Carbon Dioxide Separation. Chemsuschem, 7(1), 110-113. doi: 10.1002/cssc.201300613
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  233. Vieira, D., Figueiredo, T. A., Verma, A., Sobral, R. G., Ludovice, A. M., de Lencastre, H., & Trincao, J. (2014). Purification, crystallization and preliminary X-ray diffraction analysis of GatD, a glutamine amidotransferase-like protein from Staphylococcus aureus peptidoglycan. Acta Crystallographica Section F-Structural Biology Communications, 70, 632-635. doi: 10.1107/s2053230x14007298
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 Articles not indexed in Web of Science Core Collection:

  1. Almeida, N.F.; Leitão, S.T.; Krezdorn, N.; Rotter, B.; Winter, P.; Rubiales, D. and Vaz Patto, M.C. (2014). Allelic diversity in the transcriptomes of contrasting rust-infected genotypes of Lathyrus sativus, a lasting resource for smart breeding. BMC Plant Biology 14:376.
  2. Atilano M.L, Pereira P.M, Vaz F, Catalão M.J, Reed P, Grilo I.R, Sobral R.G, Ligoxygakis P, Pinho M.G, Filipe S.R. (2014). Bacterial autolysins trim cell surface peptidoglycan to prevent detection by the Drosophila innate immune system.eLife 2014;3:e02277 doi:10.7554/eLife.02277
  3. Coelho, D. S., & Domingos, P. M. (2014). Physiological roles of regulated Ire1 dependent decay. Frontiers in genetics, 5, 76. doi: 10.3389/fgene.2014.00076
  4. Di Pippo, F., Ellwood, N. T. W., Guzzon, A., Bohn, A., Congestri, R. (2014). Biomass accumulation and species succession in cultured phototrophic biofilms. European Journal of Phycology, 49, 384-394. doi:10.1080/09670262.2014.948075
  5. Matos, R. G., Barria, C., Moreira, R. N., Barahona, S., Domingues, S., & Arraiano, C. M. (2014). The importance of proteins of the RNase II/RNB-family in pathogenic bacteria. Frontiers in cellular and infection microbiology, 4, 68. doi:10.3389/fcimb.2014.00068

     

     

 Book Chapters:

  1. Miragaia,M. and H. de Lencastre.(2014). Staphylococcus aureus e outros Staphylococcus. In Microbiologia Médica. Part IV: Bacteriologia Médica. Chapter 20. 1st Edition. LIDEL, Lisbon, Portugal.
  2. Päpke C, Ramirez-Aguilar S, and Antonio C (2014). Oxygen Consumption under Hypoxic Condition. In: Low Oxygen Stress in Plants. Plant Cell Monographs Vol 21, ( JT van Dongen & F Licausi. Springer-Verlag Wien eds.)pp.185-208,
    ISBN 978-3-7091-1253-3.
  3. Royo, B (2014). Cyclopentadienyl-functionalized N-Heterocyclic Carbene Complexes of Iron and Nickel: Catalysts for Reductions. In Advances in Organometallic Chemistry and Catalysis: ICOMC Silver/Gold Jubilee Book (A. J. L. Pombeiro Ed.) pp.113-144, J. Wiley.
  4. Sá-Leão,R., and A. Tomasz.(2014). Streptococcus pneumoniae Evolving - Impact of Antibiotics and Vaccines. In Elsevier Reference Module in Biomedical Sciences.(Michael J. Caplan Ed.). Elsevier Inc., Oxford, United Kingdom. doi:10.1097/MCP.0b013e3283385653

 

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