2016

   Articles indexed in Web of Science Core Collection

1. Aanensen DM, Feil EJ, Holden MTG, Dordel J, Yeats CA, Fedosejev A, Goater R, Castillo-Ramírez S, Corander J, Colijn C, Chlebowicz MA, Schouls L, Heck M, Pluister G, Ruimy R, Kahlmeter G, Åhman J, Matuschek E, Friedrich AW, Parkhill J, Bentley SD, Spratt BG, Grundmann H, ESCMID Study Group on Molecular Epidemiological Markers (ESGEM), European Staphylococcal Reference Laboratory Working Group. (Prof. H. Lencastre is a member of the European SRL Working Group). Whole-genome sequencing for routine pathogen surveillance in public health: a population snapshot of invasive Staphylococcus aureus in Europe. mBio 2016 7(3):e00444-16. doi:10.1128/mBio.00444-16
2. Almeida, A. M.; Palhinhas, R. G.; Kilminster, T.; Scanlon, T.; van Harten, S.; Milton, J.; Blache, D.; Greeff, J.; Oldham, C.; Coelho, A. V.; Cardoso, L. A., The Effect of Weight Loss on the Muscle Proteome in the Damara, Dorper and Australian Merino Ovine Breeds. Plos One 2016, 11 (2). doi:10.1371/journal.pone.0146367
3. Almeida, A. S.; Soares, N. L.; Vieira, M.; Gramsbergen, J. B.; Vieira, H. L. A., Carbon Monoxide Releasing Molecule-A1 (CORM-A1) Improves Neurogenesis: Increase of Neuronal Differentiation Yield by Preventing Cell Death. Plos One 2016, 11 (5). doi:10.1371/journal.pone.0154781
4. Almeida, A. S.; Sonnewald, U.; Alves, P. M.; Vieira, H. L. A., Carbon monoxide improves neuronal differentiation and yield by increasing the functioning and number of mitochondria. Journal of Neurochemistry 2016, 138 (3), 423-435. doi:10.1111/jnc.13653
5. Almeida, H. F. D.; Freire, M. G.; Marrucho, I. M., Improved extraction of fluoroquinolones with recyclable ionic-liquid-based aqueous biphasic systems. Green Chemistry 2016, 18 (9), 2717-2725. doi:10.1039/c5gc02464a
6. Almeida, H. F. D.; Lopes, J. N. C.; Rebelo, L. P. N.; Coutinho, J. A. P.; Freire, M. G.; Marrucho, I. M., Densities and Viscosities of Mixtures of Two Ionic Liquids Containing a Common Cation. Journal of Chemical and Engineering Data 2016, 61 (8), 2828-2843.doi:10.1021/acs.jced.6b00178
7. Alvarez-Bautista, A.; Duarte, C. M. M.; Mendizabal, E.; Katime, I., Controlled delivery of drugs through smart pH-sensitivenanohydrogels for anti-cancer therapies: synthesis, drug release and cellular studies. Designed Monomers and Polymers 2016, 19 (4), 319-329. doi:10.1080/15685551.2016.1152542
8. Alves, M. N.; Fernandes, A. P.; Salgueiro, C. A.; Paquete, C. M., Unraveling the electron transfer processes of a nanowire protein from Geobacter sulfurreducens. Biochimica Et Biophysica Acta-Bioenergetics 2016, 1857 (1), 7-13 doi:10.1016/j.bbabio.2015.09.010
9. Alves, P. C.; Hartmann, D. O.; Nunez, O.; Martins, I.; Gomes, T. L.; Garcia, H.; Galceran, M. T.; Hampson, R.; Becker, J. D.; Pereira, C. S., Transcriptomic and metabolomic profiling of ionic liquid stimuli unveils enhanced secondary metabolism in Aspergillus nidulans. Bmc Genomics 2016, 17. doi:10.1186/s12864-016-2577-6
10. Antonio, C.; Papke, C.; Rocha, M.; Diab, H.; Limami, A. M.; Obata, T.; Fernie, A. R.; van Dongen, J. T., Regulation of Primary Metabolism in Response to Low Oxygen Availability as Revealed by Carbon and Nitrogen Isotope Redistribution. Plant Physiology 2016, 170 (1), 43-56. doi:10.1104/pp.15.00266
11. Araujo, S. D.; Paparella, S.; Dondi, D.; Bentivoglio, A.; Carbonera, D.; Balestrazzi, A., Physical Methods for Seed Invigoration: Advantages and Challenges in Seed Technology. Frontiers in Plant Science 2016, 7. doi:10.1007/s11240-016-1075-5
12. Araujo, S.; Balestrazzi, A.; Fac, M.; Morano, M.; Carbonera, D.; Macovei, A., MtTdp2 alpha-overexpression boosts the growth phase of Medicago truncatula cell suspension and increases the expression of key genes involved in the antioxidant response and genome stability. Plant Cell Tissue and Organ Culture 2016, 127 (3), 675-680. doi:10.3389/fpls.2016.00646
13. Arts, R. J. W.; Carvalho, A.; La Rocca, C.; Palma, C.; Rodrigues, F.; Silvestre, R.; Kleinnijenhuis, J.; Lachmandas, E.; Goncalves, L. G.; Belinha, A.; Cunha, C.; Oosting, M.; Joosten, L. A. B.; Matarese, G.; van Crevel, R.; Netea, M. G., Immunometabolic Pathways in BCG-Induced Trained Immunity. Cell Reports 2016, 17 (10), 2562-2571. doi:10.1016/j.celrep.2016.11.011
14. Arts, R. J. W.; Novakovic, B.; ter Horst, R.; Carvalho, A.; Bekkering, S.; Lachmandas, E.; Rodrigues, F.; Silvestre, R.; Cheng, S. C.; Wang, S. Y.; Habibi, E.; Goncalves, L. G.; Mesquita, I.; Cunha, C.; van Laarhoven, A.; van de Veerdonk, F. L.; Williams, D. L.; van der Meer, J. W. M.; Logie, C.; O'Neill, L. A.; Dinarello, C. A.; Riksen, N. P.; van Crevel, R.; Clish, C.; Notebaart, R. A.; Joosten, L. A. B.; Stunnenberg, H. G.; Xavier, R. J.; Netea, M. G., Glutaminolysis and Fumarate Accumulation Integrate Immunometabolic and Epigenetic Programs in Trained Immunity. Cell Metabolism 2016, 24 (6), 807-819. doi:10.1016/j.cmet.2016.10.008
15. Assuncao, M.; Canas, S.; Cruz, S.; Brazdo, J.; Zanol, G. C.; Eiras-Dias, J. E., Graft compatibility of Vitis spp.: the role of phenolic acids and flavanols. Scientia Horticulturae 2016, 207, 140-145. doi:10.1016/j.scienta.2016.05.020
16. Bouchami, O.; de Lencastre, H.; Miragaia, M., Impact of Insertion Sequences and Recombination on the Population Structure of Staphylococcus haemolyticus. Plos One 2016, 11 (6). doi:10.1371/journal.pone.0156653
17. Bressuire-Isoard, C.; Bornard, I.; Henriques, A. O.; Carlin, F.; Broussolle, V., Sporulation Temperature Reveals a Requirement for CotE in the Assembly of both the Coat and Exosporium Layers of Bacillus cereus Spores. Applied and Environmental Microbiology 2016, 82 (1), 232-243. doi:10.1128/aem.02626-15
18. Bruce, D. W.; Gao, Y. A.; Lopes, J. N. C.; Shimizu, K.; Slattery, J. M., Liquid-Crystalline Ionic Liquids as Ordered Reaction Media for the Diels-Alder Reaction. Chemistry-a European Journal 2016, 22 (45), 16113-16123. doi:10.1002/chem.201602965
19. Bugalhao, J. N.; Mota, L. J.; Franco, I. S., Identification of regions within the Legionella pneumophila VipA effector protein involved in actin binding and polymerization and in interference with eukaryotic organelle trafficking. Microbiologyopen 2016, 5 (1), 118-133. doi:10.1002/mbo3.316
20. Campos, E. J.; McVey, C. E.; Astier, Y., Stochastic Detection of MPSA-Gold Nanoparticles Using a alpha-Hemolysin Nanopore Equipped with a Noncovalent Molecular Adaptor. Analytical Chemistry 2016, 88 (12), 6214-6222. doi:10.1021/acs.analchem.5b03558
21. Campos, S. R. R.; Iranzo, O.; Baptista, A. M., Constant-pH MD Simulations Portray the Protonation and Structural Behavior of Four Decapeptides Designed to Coordinate Cu2+. Journal of Physical Chemistry B 2016, 120 (6), 1080-1091. doi:10.1021/acs.jpcb.5b12052
22. Carbas, B.; Vaz-Patto, M. C.; Bronze, M. R.; Bento-Da-Silva, A.; Trigo, M. J.; Brites, C., Maize flour parameters that are related to the consumer perceived quality of 'broa' specialty bread. Food Science and Technology 2016, 36 (2), 259-267. doi:10.1590/1678-457x.6674
23. Carinhas, N.; Pais, D. A. M.; Koshkin, A.; Fernandes, P.; Coroadinha, A. S.; Carrondo, M. J. T.; Alves, P. M.; Teixeira, A. P., Metabolic flux profiling of MDCK cells during growth and canine adenovirus vector production. Scientific Reports 2016, 6. doi:10.1038/srep23529
24. Carletti, T.; Barreto, C.; Mesplet, M.; Mira, A.; Weir, W.; Shiels, B.; Oliva, A. G.; Schnittger, L.; Florin-Christensen, M., Characterization of a papain-like cysteine protease essential for the survival of Babesia ovis merozoites. Ticks and Tick-Borne Diseases 2016, 7 (1), 85-93. doi:10.1016/j.ttbdis.2015.09.002
25. Carmona, F. J.; Rojas, S.; Sanchez, P.; Jeremias, H.; Marques, A. R.; Romao, C. C.; Choquesillo-Lazarte, D.; Navarro, J. A. R.; Maldonado, C. R.; Barea, E., Cation Exchange Strategy for the Encapsulation of a Photoactive CO-Releasing Organometallic Molecule into Anionic Porous Frameworks. Inorganic Chemistry 2016, 55 (13), 6525-6531.
26. Carvalho, L. C.; Coito, J. L.; Goncalves, E. F.; Chaves, M. M.; Amancio, S., Differential physiological response of the grapevine varieties Touriga Nacional and Trincadeira to combined heat, drought and light stresses. Plant Biology 2016, 18, 101-111. doi:10.1111/plb.12410
27. Carvalho, S. B.; Freire, J. M.; Moleirinho, M. G.; Monteiro, F.; Gaspar, D.; Castanho, M.; Carrondo, M. J. T.; Alves, P. M.; Bernardes, G. J. L.; Peixoto, C., Bioorthogonal Strategy for Bioprocessing of Specific-Site-Functionalized Enveloped Influenza-Virus-Like Particles. Bioconjugate Chemistry 2016, 27 (10), 2386-2399.doi:10.1021/acs.bioconjchem.6b00372
28. Castanheira, N.; Dourado, A. C.; Kruz, S.; Alves, P. I. L.; Delgado-Rodriguez, A. I.; Pais, I.; Semedo, J.; Scotti-Campos, P.; Sanchez, C.; Borges, N.; Carvalho, G.; Crespo, M. T. B.; Fareleira, P., Plant growth-promoting Burkholderia species isolated from annual ryegrass in Portuguese soils. Journal of Applied Microbiology 2016, 120 (3), 724-739. doi:10.1111/jam.13025
29. Castro, P. J.; Silva, A. F.; Marreiros, B. C.; Batista, A. P.; Pereira, M. M., Respiratory complex I: A dual relation with H+ and Na+? Biochimica Et Biophysica Acta-Bioenergetics 2016, 1857 (7), 928-937. doi:10.1016/j.bbabio.2015.12.008
30. Cerqueira, S. A.; Tan, M.; Li, S. J.; Juillard, F.; McVey, C. E.; Kaye, K. M.; Simas, J. P., Latency-Associated Nuclear Antigen E3 Ubiquitin Ligase Activity Impacts Gammaherpesvirus-Driven Germinal Center B Cell Proliferation. Journal of Virology 2016, 90 (17), 7667-7683. doi:10.1128/jvi.00813-16
31. Chaves, M. M.; Costa, J. M.; Zarrouk, O.; Pinheiro, C.; Lopes, C. M.; Pereira, J. S., Controlling stomatal aperture in semi-arid regions-The dilemma of saving water or being cool? Plant Science 2016, 251, 54-64. doi:10.1016/j.plantsci.2016.06.015
32. Chung, M.; Kim, C. K.; Conceicao, T.; Aires-De-Sousa, M.; De Lencastre, H.; Tomasz, A., Heterogeneous oxacillin-resistant phenotypes and production of PBP2A by oxacillin-susceptible/mecA-positive MRSA strains from Africa. Journal of Antimicrobial Chemotherapy 2016, 71 (10), 2804-2809. doi:10.1093/jac/dkw209
33. Colaco, H. G.; Santo, P. E.; Matias, P. M.; Bandeiras, T. M.; Vicente, J. B., Roles of Escherichia coli ZinT in cobalt, mercury and cadmium resistance and structural insights into the metal binding mechanism. Metallomics 2016, 8 (3), 327-336. doi:10.1039/c5mt00291e
34. Conceicao, K.; Magalhaes, P. R.; Campos, S. R. R.; Domingues, M. M.; Ramu, V. G.; Michalek, M.; Bertani, P.; Baptista, A. M.; Heras, M.; Bardaji, E. R.; Bechinger, B.; Ferreira, M. L.; Castanho, M., The anti-inflammatory action of the analgesic kyotorphin neuropeptide derivatives: insights of a lipid-mediated mechanism. Amino Acids 2016, 48 (1), 307-318. doi:10.1007/s00726-015-2088-9
35. Conceicao, T.; Coelho, C.; de Lencastre, H.; Aires-de-Sousa, M., High Prevalence of Biocide Resistance Determinants in Staphylococcus aureus Isolates from Three African Countries. Antimicrobial Agents and Chemotherapy 2016, 60 (1), 678-681. doi:10.1128/aac.02140-15
36. Conceicao, T.; Coelho, C.; Silva, I. S.; de Lencastre, H.; Aires-de-Sousa, M., Methicillin-Resistant Staphylococcus aureus in the Community in Luanda, Angola: Blurred Boundaries with the Hospital Setting. Microbial Drug Resistance 2016, 22 (1), 22-27. doi:10.1089/mdr.2015.0236
37. Conceicao, T.; de Lencastre, H.; Aires-de-Sousa, M., Efficacy of octenidine against antibiotic-resistant Staphylococcus aureus epidemic clones. Journal of Antimicrobial Chemotherapy 2016, 71 (10), 2991-2994.doi:10.1093/jac/dkw241
38. Cordeiro, A. M.; Figueiredo, D. D.; Tepperman, J.; Borba, A. R.; Lourenco, T.; Abreu, I. A.; Ouwerkerk, P. B. F.; Quail, P. H.; Oliveira, M. M.; Saibo, N. J. M., Rice phytochrome-interacting factor protein OsPIF14 represses OsDREB1B gene expression through an extended N-box and interacts preferentially with the active form of phytochrome B. Biochimica Et Biophysica Acta-Gene Regulatory Mechanisms 2016, 1859 (2), 393-404. doi:10.1016/j.bbagrm.2015.12.008
39. Correia, C.; Koshkin, A.; Carido, M.; Espinha, N.; Saric, T.; Lima, P. A.; Serra, M.; Alves, P. M., Effective Hypothermic Storage of Human Pluripotent Stem Cell-Derived Cardiomyocytes Compatible With Global Distribution of Cells for Clinical Applications and Toxicology Testing. Stem Cells Translational Medicine 2016, 5 (5), 658-669.doi:10.5966/sctm.2015-0238
40. Costa, J. M.; Vaz, M.; Escalona, J.; Egipto, R.; Lopes, C.; Medrano, H.; Chaves, M. M., Modern viticulture in southern Europe: Vulnerabilities and strategies for adaptation to water scarcity. Agricultural Water Management 2016, 164, 5-18. doi:10.1016/j.cca.2016.01.011
41. Costa, J.; de Carvalho, M., Emerging molecular biomarker targets for amyotrophic lateral sclerosis. Clinica Chimica Acta 2016, 455, 7-14. doi:10.1016/j.agwat.2015.08.021
42. Costa, O. C.; Oliveira, D. L.; Silva, A. R.; Barradas, A.; Crespo, J. P.; Duque, A. S.; Fevereiro, P., Reducing etiolation-like effect and flowering in an in vitro micropropagated Trifolium resupinatum elite genotype. Plant Cell Tissue and Organ Culture 2016, 125 (1), 177-181. doi:10.1007/s11240-015-0925-x
43. Couto, N.; Martins, J.; Lourenco, A. M.; Pomba, C.; Coelho, A. V., Identification of vaccine candidate antigens of Staphylococcus pseudintermedius by whole proteome characterization and serological proteomic analyses. Journal of Proteomics 2016, 133, 113-124. doi:10.1016/j.jprot.2015.12.017
44. Cugno, G.; Parreira, J. R.; Ferlizza, E.; Hernandez-Castellano, L. E.; Carneiro, M.; Renaut, J.; Castro, N.; Arguello, A.; Capote, J.; Campos, A. M. O.; Almeida, A. M., The Goat (Capra hircus) Mammary Gland Mitochondrial Proteome: A Study on the Effect of Weight Loss Using Blue-Native PAGE and Two-Dimensional Gel Electrophoresis. Plos One 2016, 11 (3). doi:10.1371/journal.pone.0151599
45. Cunha, B.; Silva, R. J. S.; Aguiar, T.; Serra, M.; Daicic, J.; Maloisel, J. L.; Clachan, J.; Akerblom, A.; Carrondo, M. J. T.; Peixoto, C.; Alves, P. M., Improving washing strategies of human mesenchymal stem cells using negative mode expanded bed chromatography. Journal of Chromatography A 2016, 1429, 292-303.doi:10.1016/j.chroma.2015.12.052
46. Cunha, J.; Ibanez, J.; Teixeira-Santos, M.; Brazao, J.; Fevereiro, P.; Martinez-Zapater, J. M.; Eiras-Dias, J. E., Characterisation of the Portuguese grapevine germplasm with 48 single-nucleotide polymorphisms. Australian Journal of Grape and Wine Research 2016, 22 (3), 504-516.doi:10.1111/ajgw.12225
47. de Barros, D. P. C.; Campos, S. R. R.; Azevedo, A. M.; Baptista, A. M.; Aires-Barros, M. R., Predicting protein partition coefficients in aqueous two phase system. Journal of Chromatography A 2016, 1470, 50-58. doi:10.1016/j.chroma.2016.09.072
48. de la Gandara, M. P.; Curry, M.; Berger, J.; Burstein, D.; Della-Latta, P.; Kopetz, V.; Quale, J.; Spitzer, E.; Tan, R. X.; Urban, C.; Wang, G. Q.; Whittier, S.; de Lencastre, H.; Tomasz, A., MRSA Causing Infections in Hospitals in Greater Metropolitan New York: Major Shift in the Dominant Clonal Type between 1996 and 2014. Plos One 2016, 11 (6). doi:10.1371/journal.pone.0156924
49. del Amo, E.; Esteva, C.; Hernandez-Bou, S.; Galles, C.; Navarro, M.; Sauca, G.; Diaz, A.; Gassiot, P.; Marti, C.; Larrosa, N.; Ciruela, P.; Jane, M.; Sa-Leao, R.; Munoz-Almagro, C.; Catalan Study Grp Invasive, P., Serotypes and Clonal Diversity of Streptococcus pneumoniae Causing Invasive Disease in the Era of PCV13 in Catalonia, Spain. Plos One 2016, 11 (3). doi:10.1371/journal.pone.0151125
50. Dias, J. C.; Correia, D. C.; Lopes, A. C.; Ribeiro, S.; Ribeiro, C.; Sencadas, V.; Botelho, G.; Esperanca, J.; Laza, J. M.; Vilas, J. L.; Leon, L. M.; Lanceros-Mendez, S., Development of poly(vinylidene fluoride)/ionic liquid electrospun fibers for tissue engineering applications. Journal of Materials Science 2016, 51 (9), 4442-4450.doi:10.1007/s10853-016-9756-3
51. Dias, J. C.; Martins, M. S.; Ribeiro, S.; Silva, M. M.; Esperanca, J.; Ribeiro, C.; Botelho, G.; Costa, C. M.; Lanceros-Mendez, S., Electromechanical actuators based on poly(vinylidene fluoride) with N-1 (1) (1) (2(OH)) NTf2 and C(2)mim C2SO4. Journal of Materials Science 2016, 51 (20), 9490-9503. doi:10.1007/s10853-016-0193-0
52. do Carmo, C. S.; Nunes, A. N.; Silva, I.; Maia, C.; Poejo, J.; Ferreira-Dias, S.; Nogueira, I.; Bronze, R.; Duarte, C. M. M., Formulation of pea protein for increased satiety and improved foaming properties. Rsc Advances 2016, 6 (8), 6048-6057. doi:10.1039/c5ra22452g
53. Domingues, L.; Ismail, A.; Charro, N.; Rodriguez-Escudero, I.; Holden, D. W.; Molina, M.; Cid, V. J.; Mota, L. J., The Salmonella effector SteA binds phosphatidylinositol 4-phosphate for subcellular targeting within host cells. Cellular Microbiology 2016, 18 (7), 949-969. doi:10.1111/cmi.12558
54. Duarte, A. G.; Santos, A. A.; Pereira, I. A. C., Electron transfer between the QmoABC membrane complex and adenosine 5 '-phosphosulfate reductase. Biochimica Et Biophysica Acta-Bioenergetics 2016, 1857 (4), 380-386. doi:10.1016/j.bbabio.2016.01.001
55. Duque, A. S.; Lopez-Gomez, M.; Kracmarova, J.; Gomes, C. N.; Araujo, S. S.; Lluch, C.; Fevereiro, P., Genetic engineering of polyamine metabolism changes Medicago truncatula responses to water deficit. Plant Cell Tissue and Organ Culture 2016, 127 (3), 681-690.doi:10.1016/j.bbabio.2016.01.001
56. Duro, N.; Batista-Santos, P.; da Costa, M.; Maia, R.; Castro, I. V.; Ramos, M.; Ramalho, J. C.; Pawlowski, K.; Maguas, C.; Ribeiro-Barros, A., The impact of salinity on the symbiosis between Casuarina glauca Sieb. ex Spreng. and N-2-fixing Frankia bacteria based on the analysis of Nitrogen and Carbon metabolism. Plant and Soil 2016, 398 (1-2), 327-337. doi:10.1007/s11104-015-2666-3
57. Egger, L.; Menard, O.; Delgado-Andrade, C.; Alvito, P.; Assuncao, R.; Balance, S.; Barbera, R.; Brodkorb, A.; Cattenoz, T.; Clemente, A.; Comi, I.; Dupont, D.; Garcia-Llatas, G.; Lagarda, M. J.; Le Feunteun, S.; JanssenDuijghuijsen, L.; Karakaya, S.; Lesmes, U.; Mackie, A. R.; Martins, C.; Meynier, A.; Miralles, B.; Murray, B. S.; Pihlanto, A.; Picariello, G.; Santos, C. N.; Simsek, S.; Recio, I.; Rigby, N.; Rioux, L. E.; Stoffers, H.; Tavares, A.; Tavares, L.; Turgeon, S.; Ulleberg, E. K.; Vegarud, G. E.; Vergeres, G.; Portmann, R., The harmonized INFOGEST in vitro digestion method: From knowledge to action. Food Research International 2016, 88, 217-225. doi:10.1016/j.foodres.2015.12.006
58. Eichholz, K.; Bru, T.; Tran, T. T. P.; Fernandes, P.; Welles, H.; Mennechet, F. J. D.; Manel, N.; Alves, P.; Perreau, M.; Kremer, E. J., Immune-Complexed Adenovirus Induce AIM2-Mediated Pyroptosis in Human Dendritic Cells. Plos Pathogens 2016, 12 (9). doi:10.1371/journal.ppat.1005871
59. Esteves, C. V.; Mateus, P.; Andre, V.; Bandeira, N. A. G.; Calhorda, M. J.; Ferreira, L. P.; Delgado, R., Di- versus Trinuclear Copper(II) Cryptate for the Uptake of Dicarboxylate Anions. Inorganic Chemistry 2016, 55 (14), 7051-7060.doi:10.1021/acs.inorgchem.6b00945
60. Estrada, M. F.; Rebelo, S. P.; Davies, E. J.; Pinto, M. T.; Pereira, H.; Santo, V. E.; Smalley, M. J.; Barry, S. T.; Gualda, E. J.; Alves, P. M.; Anderson, E.; Brito, C., Modelling the tumour microenvironment in long-term microencapsulated 3D co-cultures recapitulates phenotypic features of disease progression. Biomaterials 2016, 78, 50-61.doi:10.1016/j.biomaterials.2015.11.030
61. Feliciano, R. P.; Boeres, A.; Massacessi, L.; Istas, G.; Ventura, M. R.; dos Santos, C. N.; Heiss, C.; Rodriguez-Mateos, A., Identification and quantification of novel cranberry-derived plasma and urinary (poly)phenols. Archives of Biochemistry and Biophysics 2016, 599, 31-41. doi:10.1016/j.abb.2016.01.014
62. Feliciano, R. P.; Mecha, E.; Bronze, M. R.; Rodriguez-Mateos, A., Development and validation of a high-throughput micro solid-phase extraction method coupled with ultra-high-performance liquid chromatography-quadrupole time-of-flight mass spectrometry for rapid identification and quantification of phenolic metabolites in human plasma and urine. Journal of Chromatography A 2016, 1464, 21-31.doi:10.1016/j.chroma.2016.08.027
63. Fernandes, C. S. M.; Barbosa, I.; Castro, R.; Pina, A. S.; Coroadinha, A. S.; Barbas, A.; Roque, A. C. A., Retroviral particles are effectively purified on an affinity matrix containing peptides selected by phage-display. Biotechnology Journal 2016, 11 (12), 1513-1524.doi:10.1002/biot.201600025
64. Ferreira, A. M.; Esteves, P. D. O.; Boal-Palheiros, I.; Pereiro, A. B.; Rebelo, L. P. N.; Freire, M. G., Enhanced tunability afforded by aqueous biphasic systems formed by fluorinated ionic liquids and carbohydrates. Green Chemistry 2016, 18 (4), 1070-1079.doi:10.1039/c5gc01610j
65. Ferreira, A. M.; Marques, A. T.; Fontanesi, L.; Thulin, C. G.; Sales-Baptista, E.; Araujo, S. S.; Almeida, A. M., Identification of a Bitter-Taste Receptor Gene Repertoire in Different Lagomorphs Species. Frontiers in Genetics 2016, 7, 5. doi:10.3389/fgene.2016.00055
66. Ferreira, C.; Soares, A. R.; Lamosa, P.; Santos, M. A.; da Costa, M. S., Comparison of the compatible solute pool of two slightly halophilic planctomycetes species, Gimesia maris and Rubinisphaera brasiliensis. Extremophiles 2016, 20 (6), 811-820. doi:10.1007/s00792-016-0868-0
67. Figueira, I.; Fernandes, A.; Djordjevic, A. M.; Lopez-Contreras, A.; Henriques, C. M.; Selman, C.; Ferreiro, E.; Gonos, E. S.; Trejo, J. L.; Misra, J.; Rasmussen, L. J.; Xapelli, S.; Ellam, T.; Bellantuono, I., Interventions for age-related diseases: Shifting the paradigm. Mechanisms of Ageing and Development 2016, 160, 69-92.doi:10.1016/j.mad.2016.09.009
68. Figueira, M. E.; Oliveira, M.; Direito, R.; Rocha, J.; Alves, P.; Serra, A. T.; Duarte, C.; Bronze, R.; Fernandes, A.; Brites, D.; Freitas, M.; Fernandes, E.; Sepodes, B., Protective effects of a blueberry extract in acute inflammation and collagen-induced arthritis in the rat. Biomedicine & Pharmacotherapy 2016, 83, 1191-1202.doi:10.1016/j.biopha.2016.08.040
69. Filipe, L. C. S.; Campos, S. R. R.; Machuqueiro, M.; Darbre, T.; Baptista, A. M., Structuring Peptide Dendrimers through pH Modulation and Substrate Binding. Journal of Physical Chemistry B 2016, 120 (38), 10138-10152.doi:10.1021/acs.jpcb.6b05905
70. Filipe, L. C. S.; Machuqueiro, M.; Darbre, T.; Baptista, A. M., Exploring the Structural Properties of Positively Charged Peptide Dendrimers. Journal of Physical Chemistry B 2016, 120 (43), 11323-11330. doi:10.1021/acs.jpcb.6b09156
71. Flint, A.; Stintzi, A.; Saraiva, L. M., Oxidative and nitrosative stress defences of Helicobacter and Campylobacter species that counteract mammalian immunity. Fems Microbiology Reviews 2016, 40 (6), 938-960. doi:10.1093/femsre/fuw025
72. Florindo, C.; Tome, L. C.; Marrucho, I. M., Thermodynamic Study of Aggregation of Cholinium Perfluoroalkanoate Ionic Liquids. Journal of Chemical and Engineering Data 2016, 61 (12), 3979-3988. doi:10.1021/acs.jced.6b00455
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208. Serrano, M.; Kint, N.; Pereira, F. C.; Saujet, L.; Boudry, P.; Dupuy, B.; Henriques, A. O.; Martin-Verstraete, I., A Recombination Directionality Factor Controls the Cell Type-Specific Activation of sigma(K) and the Fidelity of Spore Development in Clostridium difficile. Plos Genetics 2016, 12 (9). doi:10.1371/journal.pgen.1006312
209. Shaplov, A. S.; Morozova, S. M.; Lozinskaya, E. I.; Vlasov, P. S.; Gouveia, A. S. L.; Tome, L. C.; Marrucho, I. M.; Vygodskii, Y. S., Turning into poly(ionic liquid)s as a tool for polyimide modification: synthesis, characterization and CO2 separation properties. Polymer Chemistry 2016, 7 (3), 580-591. doi:10.1039/c5py01553g
210. Shimizu, K.; Lopes, J. N. C., Comparing the structure of different ionic liquid series: Bistriflamide v. hexafluorophosphate; pure v. equimolar mixtures. Fluid Phase Equilibria 2016, 418, 181-191. doi:10.1016/j.fluid.2015.12.028
211. Shimizu, K.; Tariq, M.; Freitas, A. A.; Padua, A. A. H.; Lopes, J. N. C., Self-Organization in Ionic Liquids: From Bulk to Interfaces and Films. Journal of the Brazilian Chemical Society 2016, 27 (2), 349-362. doi:10.5935/0103-5053.20150274
212. Sifaoui, I.; Mecha, E.; Silva, A.; Chammem, N.; Mejri, M.; Abderabba, M.; Bronze, M. R., Optimized Extraction of Antioxidants from Olive Leaves Using Augmented Simplex Centroid Design. Analytical Letters 2016, 49 (9), 1323-1333. doi:10.1080/00032719.2015.1104320
213. Silva, A. C.; Teixeira, A. P.; Alves, P. M., Impact of Adenovirus infection in host cell metabolism evaluated by H-1-NMR spectroscopy. Journal of Biotechnology 2016, 231, 16-23. doi:10.1016/j.jbiotec.2016.05.025
214. Silva, A. F.; Antunes, S.; Saunders, A.; Freitas, F.; Vieira, A.; Galinha, C. F.; Nielsen, P. H.; Crespo, M. T. B.; Carvalho, G., Impact of sludge retention time on the fine composition of the microbial community and extracellular polymeric substances in a membrane bioreactor. Applied Microbiology and Biotechnology 2016, 100 (19), 8507-8521. doi:10.1007/s00253-016-7617-2
215. Silva, L. S.; Goncalves, L. G.; Silva, F.; Domingues, G.; Maximo, V.; Ferreira, J.; Lam, E. W. F.; Dias, S.; Felix, A.; Serpa, J., STAT3:FOXM1 and MCT1 drive uterine cervix carcinoma fitness to a lactate-rich microenvironment. Tumor Biology 2016, 37 (4), 5385-5395. doi:10.1007/s13277-015-4385-z
216. Silva, N.; Pinto, R. J. B.; Freire, C. S. R.; Marrucho, I. M., Production of lysozyme nanofibers using deep eutectic solvent aqueous solutions. Colloids and Surfaces B-Biointerfaces 2016, 147, 36-44. doi:10.1016/j.colsurfb.2016.07.005
217. Silveira, C. M.; Monteiro, T.; Almeida, M. G., Biosensing with Paper-Based Miniaturized Printed Electrodes-A Modern Trend. Biosensors-Basel 2016, 6 (4), 17. doi:10.3390/bios6040051
218. Simao, D.; Pinto, C.; Fernandes, P.; Peddie, C. J.; Piersanti, S.; Collinson, L. M.; Salinas, S.; Saggio, I.; Schiavo, G.; Kremer, E. J.; Brito, C.; Alves, P. M., Evaluation of helper-dependent canine adenovirus vectors in a 3D human CNS model. Gene Therapy 2016, 23 (1), 86-94. doi:10.1038/gt.2015.75
219. Simao, D.; Terrasso, A. P.; Teixeira, A. P.; Brito, C.; Sonnewald, U.; Alves, P. M., Functional metabolic interactions of human neuron-astrocyte 3D in vitro networks. Scientific Reports 2016, 6. doi:10.1038/srep33285
220. Simoes, A. S.; Tavares, D. A.; Rolo, D.; Ardanuy, C.; Goossens, H.; Henriques-Normark, B.; Linares, J.; de Lencastre, H.; Sa-Leao, R., lytA-based identification methods can misidentify Streptococcus pneumoniae. Diagnostic Microbiology and Infectious Disease 2016, 85 (2), 141-148. doi:10.1016/j.diagmicrobio.2016.03.018
221. Siopa, F.; Figueiredo, T.; Frade, R. F. M.; Neto, I.; Meirinhos, A.; Reis, C. P.; Sobral, R. G.; Afonso, C. A. M.; Rijo, P., Choline-Based Ionic Liquids: Improvement of Antimicrobial Activity. Chemistryselect 2016, 1 (18), 5909-5916. doi:10.1002/slct.201600864
222. Soares, H. R.; Castro, R.; Tomas, H. A.; Rodrigues, A. F.; Gomes-Alves, P.; Bellier, B.; Klatzmann, D.; Carrondo, M. J. T.; Alves, P. M.; Coroadinha, A. S., Tetraspanins displayed in retrovirus-derived virus-like particles and their immunogenicity. Vaccine 2016, 34 (13), 1634-1641.doi:10.1016/j.vaccine.2015.12.015
223. Sousa, A. C.; Piedade, M.; Martins, L. O.; Robalo, M. P., Eco-friendly synthesis of indo dyes mediated by a bacterial laccase. Green Chemistry 2016, 18 (22), 6063-6070. doi:10.1039/c6gc02050j
224. Spivak, I.; Rix, A.; Schmitz, G.; Fokong, S.; Iranzo, O.; Lederle, W.; Kiessling, F., Low-Dose Molecular Ultrasound Imaging with E-Selectin-Targeted PBCA Microbubbles. Molecular Imaging and Biology 2016, 18 (2), 180-190. doi:10.1007/s11307-015-0894-9
225. Stock, K.; Estrada, M. F.; Vidic, S.; Gjerde, K.; Rudisch, A.; Santo, V. E.; Barbier, M.; Blom, S.; Arundkar, S. C.; Selvam, I.; Osswald, A.; Stein, Y.; Gruenewald, S.; Brito, C.; van Weerden, W.; Rotter, V.; Boghaert, E.; Oren, M.; Sommergruber, W.; Chong, Y.; de Hoogt, R.; Graeser, R., Capturing tumor complexity in vitro: Comparative analysis of 2D and 3D tumor models for drug discovery. Scientific Reports 2016, 6. doi:10.1038/srep28951
226. Tapia, C.; Zacarias, S.; Pereira, I. A. C.; Conesa, J. C.; Pita, M.; De Lacey, A. L., In Situ Determination of Photobioproduction of H-2 by In2S3- NiFeSe Hydrogenase from Desulfovibrio vulgaris Hildenborough Using Only Visible Light. Acs Catalysis 2016, 6 (9), 5691-5698.doi:10.1021/acscatal.6b01512
227. Teles, A. R. R.; Correia, H.; Maximo, G. J.; Rebelo, L. P. N.; Freire, M. G.; Pereiro, A. B.; Coutinhoa, J. A. P., Solid-liquid equilibria of binary mixtures of fluorinated ionic liquids. Physical Chemistry Chemical Physics 2016, 18 (36), 25741-25750. doi:10.1039/c6cp05372f
228. Timmins, J.; Moe, E., A Decade of Biochemical and Structural Studies of the DNA Repair Machinery of Deinococcus radiodurans: Major Findings, Functional and Mechanistic Insight and Challenges. Computational and Structural Biotechnology Journal 2016, 14, 168-176. doi:10.1016/j.csbj.2016.04.001
229. Tome, L. C.; Marrucho, I. M., Ionic liquid-based materials: a platform to design engineered CO2 separation membranes. Chemical Society Reviews 2016, 45 (10), 2785-2824. doi:10.1039/c5cs00510h
230. Toubarro, D.; Gouveia, A.; Ribeiro, R. M.; Simoes, N.; da Costa, G.; Cordeiro, C.; Santos, R., Cloning, Characterization, and Expression Levels of the Nectin Gene from the Tube Feet of the Sea Urchin Paracentrotus Lividus. Marine Biotechnology 2016, 18 (3), 372-383. doi:10.1007/s10126-016-9698-4
231. Trindade, I. B.; Fonseca, B. M.; Matias, P. M.; Louro, R. O.; Moe, E., A putative siderophore-interacting protein from the marine bacterium Shewanella frigidimarina NCIMB 400: cloning, expression, purification, crystallization and X-ray diffraction analysis. Acta Crystallographica Section F-Structural Biology Communications 2016, 72, 667-671. doi:10.1107/s2053230x16011419
232. Ulbrich, F.; Kaufmann, K. B.; Meske, A.; Lagreze, W. A.; Augustynik, M.; Buerkle, H.; Ramao, C. C.; Biermann, J.; Goebel, U., The CORM ALF-186 Mediates Anti-Apoptotic Signaling via an Activation of the p38 MAPK after Ischemia and Reperfusion Injury in Retinal Ganglion Cells. Plos One 2016, 11 (10). doi:10.1371/journal.pone.0165182
233. Valente, C.; Dawid, S.; Pinto, F. R.; Hinds, J.; Simoes, A. S.; Gould, K. A.; Mendes, L. A.; de Lencastre, H.; Sa-Leao, R., The blp Locus of Streptococcus pneumoniae Plays a Limited Role in the Selection of Strains That Can Cocolonize the Human Nasopharynx. Applied and Environmental Microbiology 2016, 82 (17), 5206-5215. doi:10.1128/aem.01048-16
234. Valente, C.; Hinds, J.; Gould, K. A.; Pinto, F. R.; de Lencastre, H.; Sa-Leao, R., Impact of the 13-valent pneumococcal conjugate vaccine on Streptococcus pneumoniae multiple serotype carriage. Vaccine 2016, 34 (34), 4072-4078. doi:10.1016/j.vaccine.2016.06.017
235. Valente, R. S.; Xavier, K. B., The Trk Potassium Transporter Is Required for RsmB-Mediated Activation of Virulence in the Phytopathogen Pectobacterium wasabiae. Journal of Bacteriology 2016, 198 (2), 248-255. doi:10.1128/jb.00569-15
236. van Harten, S.; Kilminster, T.; Scanlon, T.; Milton, J.; Oldham, C.; Greeff, J.; Almeida, A. M., Fatty acid composition of the ovine longissimus dorsi muscle: effect of feed restriction in three breeds of different origin. Journal of the Science of Food and Agriculture 2016, 96 (5), 1777-1782. doi:10.1002/jsfa.7285
237. Vaz Patto, M. C., GRAIN LEGUME PROTEIN QUALITY: A HOT SUBJECT. Arbor-Ciencia Pensamiento Y Cultura 2016, 192 (779), 6. doi:10.3989/arbor.2016.779n3004
238. Ventura, M.; Tabernero, V.; Cuenca, T.; Royo, B.; Jimenez, G., Cyclopentadienyl-Silsesquioxane Titanium Catalysts: Factors Affecting Their Formation and Activity in Olefin Epoxidation with Aqueous Hydrogen Peroxide. European Journal of Inorganic Chemistry 2016, (17), 2843-2849. doi:10.1002/ejic.201501474
239. Vicente, J. B.; Colaco, H. G.; Sarti, P.; Leandro, P.; Giuffre, A., S-Adenosyl-L-methionine Modulates CO and NO center dot Binding to the Human H2S-generating Enzyme Cystathionine beta-Synthase. Journal of Biological Chemistry 2016, 291 (2), 572-581. doi:10.1074/jbc.M115.681221
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243. Vieira, N. S. M.; Luis, A.; Reis, P. M.; Carvalho, P. J.; Lopes-da-Silva, J. A.; Esperanca, J.; Araujo, J. M. M.; Rebelo, L. P. N.; Freire, M. G.; Pereiro, A. B., Fluorination effects on the thermodynamic, thermophysical and surface properties of ionic liquids. Journal of Chemical Thermodynamics 2016, 97, 354-361. doi:10.1016/j.jct.2016.02.013
244. Vizetto-Duarte, C.; Custodio, L.; Acosta, G.; Lago, J. H. G.; Morais, T. R.; de Sousa, C. B.; Gangadhar, K. N.; Rodrigues, M. J.; Pereira, H.; Lima, R. T.; Vasconcelos, M. H.; Barreiro, L.; Rauter, A. P.; Albericioi, F.; Varela, J., Can macroalgae provide promising anti-tumoral compounds? A closer look at Cystoseira tamariscifolia as a source for antioxidant and anti-hepatocarcinoma compounds. Peerj 2016, 4. doi:10.7717/peed.1704
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    Articles not indexed in Web of Science Core Collection:

1. Alves. M., Lamego. J, Bandeiras T, Castro R., Tomás H., Costa J., Simplicio A. L. (2016) Human carboxylesterase 2: Studies on the role of glycosylation for enzymatic activity.Biochemistry and Biophysics Reports. 5:105-110 doi:10.1016/j.bbrep.2015.11.018
2. Lencastre, de la Gandara M. P. , Evering T. H. ,Holder T. , Coller B. C. , and Tobin J.N. (2016). From the bench to the barbershop:community engagement to raise awareness about community-acquired methicillin-resistant Staphylococcus aureus and hepatitis C virus infection. Prog Community Health Partnersh. 10(3):413-423. doi:10.1353/cpr.2016.0048.

    Book Editor:

1. Araújo SS and Balestrazzi A (Eds.) (2016). New Challenges in Seed Biology: Basic and Translational Research driving Seed Technology. InTech, Rikeja

     Book Chapters:

1. Almeida D.M.*, Almadanim M.C.*, Lourenço T., Abreu I.A., Saibo N.J.M., Oliveira M.M. (2016) Screening for abiotic stress tolerance in rice: salt, cold and drought. In: Environmental Responses in Plants, Methods in Molecular Biology, Vol. 1398, pp.155-182. ISBN: 978-1-4939-3356-3. Springer, New York, NY, USA. doi: 10.1007/978-1-4939-3356-3_14
2. André Krom, Mara Almeida, Leo Hennen, Edgaras Leichteris, Arnold Sauter, Dirk Stemerding (2016) The Future Panel on Public Health Genomics-Lessons Learned and Future Perspectives. In: Policy-Oriented Technology Assessement Across Europe. Expanding Capacities. ((Klüver, L., Nielsen, R. Ø. and Jørgensen, M-L. (Eds.) Chapter 6, pp.90-104. ISBN: 978-1-349-85095-2. Palgrave Macmillan, UK.
3. Covas G., Vaz F., Henriques G., Pinho M.G., Filipe S.R. (2016) Analysis of Cell Wall Teichoic Acids .In Staphylococcus aureus. In: Hong HJ. (eds) Bacterial Cell Wall Homeostasis. Methods in Molecular Biology, vol 1440. Humana Press, New York, NY
4. Danielle Bütschi, Mara Almeida (2016) Technology Assessment for Parliaments: Towards reflexive governance of innovation. In: Policy-Oriented Technology Assessement Across Europe. Expanding Capacities. (Klüver, L., Nielsen, R. Ø. and Jørgensen, M-L. (Eds.)) Chapter 4, pp.64-76. ISBN: 978-1-349-85095-2. Palgrave Macmillan, UK.
5. Diego O. Hartmann, Cristina Silva Pereira (2016) Toxicity of ionic liquids: past, present and future. In Ionic Liquids in Lipid Processing and Analysis.( Xuebing Xu, Zheng Guo and Ling-Zhi Cheong (eds)). Chapter 13, pp.403-421. ISBN: 978-1-63067-047-4. Elsevier B.V.
6. Garcia G., Santos C.N., Menezes R. (2016)High-throughput yeast-based reporter assay to identify compounds with anti-inflammatory potential. In: Proteostasis - Methods and Protocols, Chapter 29, Springer doi:10.1007/978-1-4939-3756-1.
7. Lelu-Walter M-A, Klimaszewska K, Miguel C, Aronen T, Hargreaves C, Teyssier C, Trontin J-F (2016) Somatic embryogenesis for more effective breeding and deployment of improved varieties in Pinus spp.: bottlenecks and recent advances. In: Somatic Embryogenesis - Fundamental Aspects and Applications. Loyola-Vargas VM, Ochoa-Alejo N (eds), Springer Verlag. Chap 19, pp 319-365, ISBN 978-3-319-33704-3
8. Lima, L. M. P.; Iranzo, O.(2016) Engineering Short Preorganized Peptide Sequences for Metal Ion Coordination: Copper(II) a Case Study. In Peptide, Protein and Enzyme Design, Pecoraro, V. L., Ed. 2016; Vol. 580, pp 333-364.
9. Lourenço T.F., Barros P.M., Saibo N.J.M., Abreu I.A., Santos A.P., António C., Pereira J.S., Oliveira M.M. (2016). Genomics of Drought. In: Plant Genomics and Climate Change. New York, NY: Springer Science, pp 85-135. (ISBN 978-1-4939-3534-5) doi: 10.1007/978-1-4939-3536-9_5.
10. Mata A.T., Jorge T.F., Pires M.V., and António C. (2016) Drought stress tolerance in plants: insights from metabolomics. In: Molecular and Genetic Perspectives, Vol. 2, eds. MA Hossain, SH Wani, S Bhattachajee, DJ Burritt & LS Phan Tran. Springer Publishing (ISBN 978-3-319-32421-0).
11. Miguel CM, Rupps A, Raschke J, Rodrigues AS, Trontin J-F. (2016) Impact of molecular studies on somatic embryogenesis development for implementation in conifer multi-varietal forestry. In: Vegetative Propagation of Forest trees. National Institute of Forest Science. Seoul, Korea, pp 373-421.
12. Parreira J.R., Branco D., Almeida A.M., Czubacka A., Agacka-Moldoch M., Paiva J.A.P., Tavares-Cadete F., Araújo S.S. (2016). Systems biology approaches to improve drought stress in plants: state of the art and future challenges. In: Drought stress tolerance in plants. Volume 2 - Molecular and Genetic Perspectives. pp 433-471. Springer International Publishing.
13. Petronilho, A, Albrech, M.  (2016) Non-Classical N-Heterocyclic Carbene Complexes In N-Heterocyclic Carbenes: from laboratory curiosities to efficient synthetic tools, RSC Catalysis Series, Ed. S. Díez-González, Chapter 3, pag. 9-99.
14. Royo, B, S. M. Podhajsky, M. S. Sigman (2016). Oxidation Reactions with NHC-Metal Complexes. In N-Heterocyclic Carbenes: from laboratory curiosities to efficient synthetic tools, RSC Catalysis Series, Ed. S. Díez-González, Chapter 12, pag. 456-483.
15. Todorovic, S. and Murgida, D. H. (2016). Surface-Enhanced Raman Scattering of Biological Materials. In Encyclopedia of Analytical Chemistry. 1–29. doi:10.1002/9780470027318.a9574
16. Zarrouk O, Costa JM, Francisco R, Lopes C, Chaves MM (2016). Chapter 5. Drought and water management in Mediterranean vineyards. In: Grapevine in a Changing Environment: a Molecular and Ecophysiological Perspective. Geros H., Chaves M., Medrano H. and Delrot S. (Eds.), Wiley-Blackwell Books, UK. pp. 38–67;